PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang09g02980.1
Common NameLR48_Vigan05g156900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 461aa    MW: 51552 Da    PI: 6.5551
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang09g02980.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS287.92.8e-88524442373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfs 94 
                     ++lLl+cA a++s+d +laq++++ l++ asp gd++qRl++ f++AL +r +r +++ ++   +++     + + +++++l  ++++ P+++f+
  Vang09g02980.1  52 EKLLLHCASALESNDITLAQQVMWVLNNVASPVGDTNQRLTSWFLRALISRASRICPTAMSFKGSNTI----QRRLMSVTELagYVDLIPWHRFG 142
                     689***************************************************77766643322222....333334444466*********** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl..... 181
                     + + N+ I +a+ g +rvHi+Df+i++++QWp++++aLa+ pegppslRiT+     ++    + +++e+g rL +fA+  +vpfefnv+     
  Vang09g02980.1 143 YCASNNEIFKAITGYQRVHILDFSITHCMQWPTFIDALAKNPEGPPSLRITVPFCRPHVpplVNVSIHEVGLRLGNFARFRDVPFEFNVIgntgp 237
                     ***************************************************9555334468999******************************* PP

            GRAS 182 ..............vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                                    +  l+ l++ +L+++++Eal++n++  l +l d++  +++    rd++L+l+k+l+P++v +v++++d++++s+  r++ 
  Vang09g02980.1 238 ltpvelsdessnfhFEAMLSLLNPTTLNLREDEALVINCQNWLRYLSDDRKGSRQslsLRDAFLNLIKGLNPRIVLLVDEDCDLSASSLTSRITT 332
                     *****99999888555688999************************9987665555779************************************ PP

            GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                     ++++ +  fd+le+ lp++s +r+  E   +g++i+n+++ eg +r+er e   + ++r++++G+ +v++ ++++ ++k ll +++  g+ ++ e
  Vang09g02980.1 333 CFNHLWIPFDALETFLPKDSGQRAEFESD-IGQKIENIISFEGHQRIERLECGVQMSQRMKNVGYLNVQFCDETVREVKGLLDEHS-SGWGMKRE 425
                     *****************************.*******************************************************9.8899**** PP

            GRAS 355 sgslvlgWkdrpLvsvSaW 373
                     +g lvl+Wk+++ v+++aW
  Vang09g02980.1 426 EGMLVLTWKGNSCVFATAW 444
                     ******************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.26625426IPR005202Transcription factor GRAS
PfamPF035149.8E-8652444IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MHVTSSHSHM KAELKGTSVS FQNPTTLFNT PHNPLSGALK GCLGSLDGAC IEKLLLHCAS  60
ALESNDITLA QQVMWVLNNV ASPVGDTNQR LTSWFLRALI SRASRICPTA MSFKGSNTIQ  120
RRLMSVTELA GYVDLIPWHR FGYCASNNEI FKAITGYQRV HILDFSITHC MQWPTFIDAL  180
AKNPEGPPSL RITVPFCRPH VPPLVNVSIH EVGLRLGNFA RFRDVPFEFN VIGNTGPLTP  240
VELSDESSNF HFEAMLSLLN PTTLNLREDE ALVINCQNWL RYLSDDRKGS RQSLSLRDAF  300
LNLIKGLNPR IVLLVDEDCD LSASSLTSRI TTCFNHLWIP FDALETFLPK DSGQRAEFES  360
DIGQKIENII SFEGHQRIER LECGVQMSQR MKNVGYLNVQ FCDETVREVK GLLDEHSSGW  420
GMKREEGMLV LTWKGNSCVF ATAWVPCEIR DHVGMDASLP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B4e-58174464420Protein SHORT-ROOT
5b3h_E4e-58174464420Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang09g02980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017424643.10.0PREDICTED: scarecrow-like protein 32
TrEMBLA0A0L9UN690.0A0A0L9UN69_PHAAN; Uncharacterized protein
STRINGXP_007149938.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100743142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-119GRAS family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]