PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang09g02540.1 | ||||||||
Common Name | LR48_Vigan04g049900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 260aa MW: 28891.8 Da PI: 9.2593 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 119.8 | 2.4e-37 | 12 | 97 | 43 | 129 |
NAM 43 ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 P dLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++ vg+kktLvfykgrapkgektdWvmheyrle Vang09g02540.1 12 VPMDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFR-GKSPVGMKKTLVFYKGRAPKGEKTDWVMHEYRLE 97 599***888999****************************************.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 42.228 | 1 | 121 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.11E-42 | 13 | 121 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-17 | 21 | 96 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MENVSVLCKE EVPMDLPWKA KMGEKEWYFF CVRDRKYPTG LRTNRATEAG YWKATGKDKE 60 IFRGKSPVGM KKTLVFYKGR APKGEKTDWV MHEYRLEGKF SVPNLPKTAK NEWVICRVFQ 120 KSSGGKKTHI DGIMMMDSYG NELGSSALPP LTDSSPSIGN TKALSVTEQA PPTLPSPGSS 180 NHYLRSFFNN HGKGSFLRNG FEPETEMVSV SQETGVSTEV NAETSSVVSN LEMGNRLFEN 240 RNNPIGSAAP VDLASLWNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-34 | 13 | 127 | 59 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-34 | 13 | 127 | 59 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-34 | 13 | 127 | 59 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-34 | 13 | 127 | 59 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-34 | 13 | 127 | 59 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-34 | 13 | 127 | 59 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang09g02540.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ028773 | 1e-156 | DQ028773.1 Glycine max NAC domain protein NAC5 (NAC5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017420852.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 2e-93 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A0L9UC63 | 0.0 | A0A0L9UC63_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RG88 | 0.0 | A0A0S3RG88_PHAAN; Uncharacterized protein | ||||
STRING | XP_007138169.1 | 1e-153 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF409 | 34 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-95 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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