PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang09g02270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 234aa MW: 26067.1 Da PI: 11.2782 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.4 | 3.8e-06 | 30 | 75 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-..STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskK..lsKaeiLekAveYIksLq 55 R ++iN+ + L+ llP++ ++++ + +s ++i ++++ +I++Lq Vang09g02270.1 30 RESKINDLLLMLKALLPQQNQTSDSRvsVSMMQIIKETCSHISMLQ 75 6689**************66566665469999*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.29E-7 | 27 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-6 | 30 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MATHIKVSTI AKLQTFSMSG RRKFRTSKFR ESKINDLLLM LKALLPQQNQ TSDSRVSVSM 60 MQIIKETCSH ISMLQKEVKE LGERVADNNS QTVTRILLGP RHHFLHLLKA RRVTRLFQSV 120 QACLLVRHRR AHPRMHVAHC FVGQRRCGRQ RVVESTQRVV ELVLAVGECT SLRRAERGRE 180 ALERVERGAE REGEDGLGIG GVGGGRDGSE ARGGEARDVA DESDGVGRVG KLL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang09g02270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10624 | 24 | 39 |