PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang09g01650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 589aa MW: 63871.5 Da PI: 5.3269 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 49.1 | 1.2e-15 | 145 | 175 | 25 | 55 |
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 e+A+Pk+il+lm+v+gLt+e+v+SHLQkYRl Vang09g01650.1 145 EEAVPKKILDLMNVEGLTRENVASHLQKYRL 175 57****************************8 PP | |||||||
2 | Response_reg | 55.8 | 2.7e-19 | 46 | 114 | 40 | 109 |
HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 40 kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109 +++++Dl++ D++mp+mdG++ll+ e++lp+i+++ah++ +++ + + Ga d+l Kp+ +eel + Vang09g01650.1 46 CQNKFDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSDTKLVMQGVTHGACDYLLKPVRIEELKN 114 4566*******************87754.558***********************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50110 | 29.201 | 1 | 120 | IPR001789 | Signal transduction response regulator, receiver domain |
SuperFamily | SSF52172 | 2.85E-28 | 23 | 126 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.5E-17 | 24 | 116 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 4.01E-23 | 27 | 119 | No hit | No description |
Gene3D | G3DSA:3.40.50.2300 | 4.1E-27 | 47 | 137 | No hit | No description |
Pfam | PF00072 | 3.3E-16 | 47 | 114 | IPR001789 | Signal transduction response regulator, receiver domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-15 | 143 | 179 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-13 | 144 | 175 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 2.51E-8 | 144 | 179 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 589 aa Download sequence Send to blast |
MAVENQRDHL GDEDGGGDRF PVGMRVLAVD DDPLCLKVLE NLLRKCQNKF DLVISDVNMP 60 DMDGFKLLEL VGLEMDLPVI MLSAHSDTKL VMQGVTHGAC DYLLKPVRIE ELKNIWQHVV 120 RRKNFDGRDQ SKASNDEKAL NIAGEEAVPK KILDLMNVEG LTRENVASHL QKYRLYLKKA 180 NHQANMVAAL GGSDSYLRMG SIEGFGDFCT ASGSGRISNT TLPSYASSGI FSRLNSPAGL 240 NMRGISTSAL IRPVQTQNMN SSLNALGNIQ PSIFSANQSS SLLQGIPTSI ELNQSKQSNC 300 STGLSQLSQV DSSAFTVASG FPDSRATTVN GPNNSLSCGS NNHIILQGNP QQTHGPGTFR 360 NQSSVRAASL NAESFGIGGS SNMLDYNRCN KNWQNAAQLS KFPSNPLPLC EAFSNDQLPP 420 TSINVSNSGT HIGNSPVDFS SRMAMTFPLE DVQALSYTPQ QRWEEHKLDY DQNLSRPFNP 480 VNSYASSSAA TSSMGHGLNQ NNTICSNRIN ASLVGPCTEV DKFSSDIPLK SNEAYILEQL 540 KSQEGFMQNT FGTLDDIMGA MVKREQNELT LLDGEIVFDA SYPVGSCN* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang09g01650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017422635.1 | 0.0 | PREDICTED: two-component response regulator ARR12-like | ||||
Swissprot | A2X1N2 | 8e-80 | ORR24_ORYSI; Two-component response regulator ORR24 | ||||
TrEMBL | A0A0S3RGS5 | 0.0 | A0A0S3RGS5_PHAAN; Two-component response regulator | ||||
STRING | XP_007138266.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G25180.1 | 2e-74 | response regulator 12 |