PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang09g01250.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB_related

Protein Properties

Length: 303aa MW: 32577.5 Da PI: 9.519

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang09g01250.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.2	4.3e-14	83	127	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r k+Rt+ q+ s+ qky Vang09g01250.1 83 PWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKY 127 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.519	76	132	IPR017930	Myb domain
SuperFamily	SSF46689	6.5E-17	78	132	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-16	79	130	IPR006447	Myb domain, plants
SMART	SM00717	4.6E-9	80	130	IPR001005	SANT/Myb domain
CDD	cd00167	1.28E-9	83	128	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.5E-10	83	127	IPR009057	Homeodomain-like
Pfam	PF00249	2.4E-11	83	127	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MPLSSASAAA PHSASSAEIM LFGVRVVVDS MRKSVSMNNL SQYDHHRDTA AAKDDAVAAG 60 YASADDAAPN NSGKNRDRKR GIPWTEEEHK LFLVGLQKVG KGDWRGISRN YVKTRTPTQV 120 ASHAQKYFLR RTNLNRRRRR SSLFDITTDS VSCVQVSTTP MEEGQIQYQD NVSLVHPMYP 180 VTPEGSNMNG FSKLPMYSKD IGTGAMSAQA GNPMKILTLG QGNVEQNGPS TKLVCTTAPN 240 IVPDYKGSTA SDITATSLSS LDPPTLSLGL SLSSSQRQTS SIHSAFHSLS CFNNGDSFIT 300 VA*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang09g01250.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017422358.1	0.0	PREDICTED: transcription factor MYB1R1-like isoform X1
Swissprot	Q2V9B0	8e-64	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A0S3RG91	0.0	A0A0S3RG91_PHAAN; Uncharacterized protein
STRING	XP_007138137.1	1e-168	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4248	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	7e-45	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]