PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0976s00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 154aa MW: 17578.2 Da PI: 10.6382 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.3 | 1.4e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvt+skR+ngilKKA+E+SvLCda+v++iif+ +gk++ey+s Vang0976s00050.1 9 KRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLIIFGASGKMHEYIS 59 79***********************************************86 PP | |||||||
2 | K-box | 27.7 | 1.2e-10 | 71 | 108 | 1 | 38 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhl 38 yq++sgk l++ak+e+l++e+++Lkke++++q e+R+ Vang0976s00050.1 71 YQRASGKTLWDAKHENLSNEIDRLKKENDSMQIELRKQ 108 78999*****************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.931 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.3E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.26E-39 | 2 | 80 | No hit | No description |
SuperFamily | SSF55455 | 1.16E-36 | 2 | 96 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MGRGKIEIKR IENSSNRQVT YSKRKNGILK KAKEISVLCD AQVSLIIFGA SGKMHEYISP 60 STTLIDILDR YQRASGKTLW DAKHENLSNE IDRLKKENDS MQIELRKQVS SNLVFFVPQV 120 EVHRMFKRNV SATFGIRKRG KHAWTVDLTD NIS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 3e-19 | 1 | 91 | 1 | 83 | MEF2 CHIMERA |
6bz1_B | 3e-19 | 1 | 91 | 1 | 83 | MEF2 CHIMERA |
6bz1_C | 3e-19 | 1 | 91 | 1 | 83 | MEF2 CHIMERA |
6bz1_D | 3e-19 | 1 | 91 | 1 | 83 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00080 | ChIP-seq | Transfer from AT5G20240 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0976s00050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT089901 | 1e-136 | BT089901.1 Soybean clone JCVI-FLGm-3I15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022636007.1 | 6e-76 | floral homeotic protein PMADS 2-like isoform X3 | ||||
Refseq | XP_022636008.1 | 6e-76 | floral homeotic protein PMADS 2-like isoform X3 | ||||
Swissprot | Q0HA25 | 3e-63 | MADS9_VITVI; Agamous-like MADS-box protein MADS9 | ||||
TrEMBL | A0A0B2SH30 | 3e-74 | A0A0B2SH30_GLYSO; Floral homeotic protein PMADS 2 | ||||
TrEMBL | A0A3Q0EW89 | 1e-74 | A0A3Q0EW89_VIGRR; floral homeotic protein PMADS 2-like isoform X3 | ||||
STRING | XP_007137476.1 | 7e-73 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4355 | 32 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 4e-54 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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