PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0942s00010.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 154aa    MW: 17953.5 Da    PI: 9.998
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0942s00010.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.61.1e-3276134159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  Vang0942s00010.2  76 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 134
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-3461134IPR003657WRKY domain
SuperFamilySSF1182904.18E-2968135IPR003657WRKY domain
PROSITE profilePS5081129.35671136IPR003657WRKY domain
SMARTSM007749.8E-3776135IPR003657WRKY domain
PfamPF031061.5E-2577133IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MEFASFIGQT VPLSFEANRK VRAWEEVTDC LMSKRMGGGD NHHLGVSAMK MKKMKARRKV  60
REPRFCFKTM SDVDVLDDGY KWRKYGQKVV KNTQHPRSYY RCTQDNCRVK KRVERLAEDP  120
RMVITTYEGR HVHSPSNELE DSQSPSELSS FLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2767133874Probable WRKY transcription factor 4
2lex_A1e-2767133874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0942s00010.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195811e-169EU019581.1 Glycine max WRKY45 (WRKY45) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014489951.13e-96probable WRKY transcription factor 13
RefseqXP_017407180.13e-96PREDICTED: probable WRKY transcription factor 13 isoform X1
SwissprotQ9SVB71e-60WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A0L9T9376e-95A0A0L9T937_PHAAN; Uncharacterized protein
TrEMBLA0A0S3REQ06e-95A0A0S3REQ0_PHAAN; Uncharacterized protein
TrEMBLA0A1S3T8568e-95A0A1S3T856_VIGRR; probable WRKY transcription factor 13
STRINGGLYMA04G39621.11e-81(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.12e-54WRKY DNA-binding protein 13