PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0942s00010.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 216aa    MW: 25131.6 Da    PI: 8.3695
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0942s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.2e-32138196159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  Vang0942s00010.1 138 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 196
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-33123196IPR003657WRKY domain
SuperFamilySSF1182908.89E-29130197IPR003657WRKY domain
PROSITE profilePS5081129.356133198IPR003657WRKY domain
SMARTSM007749.8E-37138197IPR003657WRKY domain
PfamPF031063.1E-25139195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MMSTTSQTSV NHSLFEEQDQ IPTQMEFNIP FPSTQAFPPL GCHQSLKSIS ALTYSHFQLW  60
ERIQGLFVFI NLYDKTDNQD TCLMAWEEVT DCLMSKRMGG GDNHHLGVSA MKMKKMKARR  120
KVREPRFCFK TMSDVDVLDD GYKWRKYGQK VVKNTQHPRS YYRCTQDNCR VKKRVERLAE  180
DPRMVITTYE GRHVHSPSNE LEDSQSPSEL SSFLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-27129195874Probable WRKY transcription factor 4
2lex_A6e-27129195874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0942s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195811e-167EU019581.1 Glycine max WRKY45 (WRKY45) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017407180.11e-119PREDICTED: probable WRKY transcription factor 13 isoform X1
SwissprotQ9SVB71e-59WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A0L9T9371e-117A0A0L9T937_PHAAN; Uncharacterized protein
TrEMBLA0A0S3REQ01e-117A0A0S3REQ0_PHAAN; Uncharacterized protein
STRINGXP_007137585.11e-111(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-53WRKY DNA-binding protein 13