PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0941s00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ARF | ||||||||
Protein Properties | Length: 705aa MW: 77850.4 Da PI: 7.3635 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.1 | 3.5e-23 | 120 | 221 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f k+lt+sd+++ g +++p+ +ae++ ++ + + +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF + Vang0941s00010.1 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--NILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--R 208 89****************************997656666..69999********************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++ l+v+++r+ Vang0941s00010.1 209 AENGDLCVGIRRA 221 488999****997 PP | |||||||
2 | Auxin_resp | 110.9 | 1.3e-36 | 289 | 372 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a++k++FevvY+Pra+t+eF+vk+ ve+al+++++ G Rfkmafetedss++++ +Gt+++v+ +dp++WpnS+Wr+L+ Vang0941s00010.1 289 AANLAANKQPFEVVYYPRACTPEFCVKAPLVEAALQIRWCSGIRFKMAFETEDSSRISWfMGTISSVQVADPLNWPNSPWRLLQ 372 7899******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.19E-29 | 114 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-36 | 114 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.56E-21 | 119 | 220 | No hit | No description |
SMART | SM01019 | 6.0E-21 | 120 | 222 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.014 | 120 | 222 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-21 | 120 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.6E-31 | 289 | 372 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 21.754 | 618 | 698 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 705 aa Download sequence Send to blast |
MREMITFMDS KEKSKEAEKC LDPQLWHACA GGMVQMPAVN SKVYYFPQGH AEHACGPVHF 60 RTCPKVRPLV PCRVTAIKYM ADPDTDEVYA KLRLAPLSVN EADYDREVVG PETQDKPASF 120 AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSADPPVQNI LAKDVHGETW KFRHIYRGTP 180 RRHLLTTGWS TFVNHKKLVA GDSIVFLRAE NGDLCVGIRR AKKGIGGGLE GSSGWNPAGG 240 SCPMPYGGFS PFLREDDNRI LRNGNSNGLN PSVSMTGRGK VRPEAVVEAA NLAANKQPFE 300 VVYYPRACTP EFCVKAPLVE AALQIRWCSG IRFKMAFETE DSSRISWFMG TISSVQVADP 360 LNWPNSPWRL LQVTWDEPDL LQNVRRVSPW LVELVSNMPA IHLSPFSPPR KKLRLPQHPD 420 FPLEGQIPLP TFSGNLLGPS NTNQFGCLPE STPAGMQGAR HGHYGLPISD LHFSKLHSGL 480 FPAGFPPIDH AATPMRISNN QPLQKPSISE NVSCLLSMAN STPSSKKTDE GKTPQLVLFG 540 QRILTEQQIS LSSSVDTFSP VLTKICCSDG HADKVPNISD CSGSALHQQQ GLQEQRSSCE 600 RFQWYKDNPQ ETEAGLEAGH CKVFMESEDV GRTMDLSLLR SYDELYRRLA DMFGIEKSEM 660 LSQVLYRDSN GAVKHIGDEP LSDFIKSARR LTILTDSGSN NVGV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 3e-77 | 11 | 393 | 41 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0941s00010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017442852.1 | 0.0 | PREDICTED: auxin response factor 18-like | ||||
Refseq | XP_017442853.1 | 0.0 | PREDICTED: auxin response factor 18-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A0S3SST2 | 0.0 | A0A0S3SST2_PHAAN; Auxin response factor | ||||
STRING | XP_007144353.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF637 | 34 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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