PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang08g06540.1
Common NameLR48_Vigan11g160900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 169aa    MW: 19177.2 Da    PI: 5.6391
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang08g06540.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.43.3e-05131156530
                     HHHHHHHHHHHHHHHHHHHHCTSCCC CS
             HLH   5 hnerErrRRdriNsafeeLrellPka 30 
                     h + Er+RR+++ + f  L  l+P +
  Vang08g06540.1 131 HIMSERKRRENLTKMFIALSALIPGL 156
                     8999********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.12E-7123159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.505126168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-6129156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.25E-4131160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MDDESWQQWV SILEENDWHT LRDFDLNSAG EEFKGDNSVV PAEDSLKESS TTLLSNFPSL  60
EENTGFDTTS VTQQHASPRP KSCVLSFENF TSVPIFDKKT CQHLGEHSNQ TQEKTRKPLK  120
RERNSSQTLD HIMSERKRRE NLTKMFIALS ALIPGLKKVS SYSFSFAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134139ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang08g06540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017441322.11e-115PREDICTED: transcription factor bHLH18-like
TrEMBLA0A0L9VU271e-114A0A0L9VU27_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SVP31e-114A0A0S3SVP3_PHAAN; Uncharacterized protein
STRINGXP_007134385.12e-66(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2332324
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-12bHLH family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]