PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang08g06140.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 384aa    MW: 43655.6 Da    PI: 5.5596
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang08g06140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.81.9e-08259300955
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r RR++i ++ +eL +l+P       +K++ ae+L  A +Y+k+Lq
  Vang08g06140.1 259 ARERRRKISEKTQELGKLVPGG-----PKMNTAEMLHAAAKYVKYLQ 300
                     599*****************95.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.671250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-12251309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.06E-8256303No hitNo description
SMARTSM003533.9E-10256305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-11257308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-6259300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MMAPGTYFNW DTVQIPSSET NTFHMLEEVA TPNLQHLFSY YDQKLFLPTG SFENYIDPTG  60
GFLHPSDIDT SLYDPSSSFA HPNIFPTSQQ VTLVESKVCL SFLKTQLFHL QRFIFMMAPF  120
HMLEEVPTPN LQHLFSYYID PTGGSLYPSD IDTSLYDPSI SLAHSIIFPT FQQDNLLPSP  180
KRQKCCCESE VQKLTTQTAL PSSYTDEFVV PYDNFYSSHI EELPQQISVG FAQFHSTCED  240
LKCVKKETEK TISPQSLAAR ERRRKISEKT QELGKLVPGG PKMNTAEMLH AAAKYVKYLQ  300
AQVNLLELTK SLEDNAETPS GMLHSLVVSS FVQEKLYREE MCFVAKETVI TMTNHEDVQS  360
RPTILRDLKQ LIRTNIANKE KKE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang08g06140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017441310.10.0PREDICTED: transcription factor bHLH53-like
TrEMBLA0A0L9VTW60.0A0A0L9VTW6_PHAAN; Uncharacterized protein
STRINGGLYMA08G17747.12e-95(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.13e-28bHLH family protein