PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang08g05990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 259aa MW: 29753.5 Da PI: 5.0207 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.4 | 5.4e-21 | 100 | 150 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GVr+++ +grW+AeIrd + + rkr++lg+f+taeeAa +++a+ +++g Vang08g05990.1 100 SKFRGVRQRP-WGRWAAEIRDpF-Q---RKRVWLGTFDTAEEAAMVYDRAAISFRG 150 79********.**********55.3...5**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.2E-14 | 100 | 150 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-21 | 100 | 157 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.28E-34 | 100 | 156 | No hit | No description |
SMART | SM00380 | 2.2E-36 | 101 | 164 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-28 | 101 | 157 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.024 | 101 | 158 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.5E-11 | 102 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.5E-11 | 124 | 140 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MEEHQEKTIV TKFVKSKFFF PKVIRISATD QNATDSSSEE DDEERNLHRV KKVVSEIRIV 60 HANRTKGHNK NINNNTDCCC CSAKYNKTME QHYQREKSES KFRGVRQRPW GRWAAEIRDP 120 FQRKRVWLGT FDTAEEAAMV YDRAAISFRG VDAVTNLIKP PLKECESVVK PKSCCACASP 180 TSVLLFQPWM EPLCLEETFK EEVFDGLNYE VDSLLFSDHA LCEQPLPTTL SNVDVSLDED 240 LESCKWDVDS FFSDEAFE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-20 | 102 | 163 | 3 | 62 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 4e-20 | 102 | 163 | 6 | 65 | ATERF1 |
3gcc_A | 4e-20 | 102 | 163 | 6 | 65 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang08g05990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014515477.1 | 1e-165 | ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | A0A0S3SVQ6 | 0.0 | A0A0S3SVQ6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007134294.1 | 1e-128 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 6e-36 | cytokinin response factor 4 |