PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang08g05310.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 264aa MW: 29153.8 Da PI: 5.1853 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1.1e-18 | 100 | 151 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr + +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g+ Vang08g05310.3 100 PSYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 151 57*****998.**********843...6***********************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.60E-33 | 100 | 160 | No hit | No description |
Pfam | PF00847 | 2.5E-13 | 100 | 151 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-37 | 101 | 164 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-22 | 101 | 159 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.301 | 101 | 158 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-32 | 101 | 159 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-10 | 102 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-10 | 124 | 140 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MRKRINMEND ADFFNSFAST STSTTSTTTT TTTTTPSIFI DTTNTSISST SSSSSSSTSN 60 SSNSDSFTKQ HSKTPTTSQT LLENEKESKG CCKKRKLENP SYRGVRMRNW GKWVSEIREP 120 RKKSRIWLGT YPTAEMAARA HDVAALAIKG HSAYLNFPEL AQELPTPAST SPKDIQAAAA 180 KAANTPFDVN HCQSTIEDEE REEEPRQTQN VSSSSSNSTN DDDTLFDLPD LFPDELCSYS 240 SSWHLCAVGS GFRLEESLFW ENY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-17 | 98 | 158 | 11 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang08g05310.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017441350.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF038-like | ||||
Swissprot | Q8LBQ7 | 4e-61 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A0S3SVN3 | 0.0 | A0A0S3SVN3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007134514.1 | 1e-112 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 2e-44 | ERF family protein |
Publications ? help Back to Top | |||
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