PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang08g05310.1
Common NameLR48_Vigan11g170400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 236aa    MW: 25732.8 Da    PI: 4.4571
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang08g05310.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-1776123556
             AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  Vang08g05310.1  76 GVRMRN-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 123
                     9**998.**********843...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.8E-3373136IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2073131IPR016177DNA-binding domain
PROSITE profilePS5103221.58873130IPR001471AP2/ERF domain
PRINTSPR003676.8E-87485IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2976131IPR001471AP2/ERF domain
PfamPF008472.2E-1176123IPR001471AP2/ERF domain
CDDcd000181.13E-3076132No hitNo description
PRINTSPR003676.8E-896112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MENDADFFNS FASTSTSTTS TTTTTTTTTP SIFIDTTNTS ISSTSSSSSS STSNSSNSDS  60
FTKQHSKTPT TSQTLGVRMR NWGKWVSEIR EPRKKSRIWL GTYPTAEMAA RAHDVAALAI  120
KGHSAYLNFP ELAQELPTPA STSPKDIQAA AAKAANTPFD VNHCQSTIED EEREEEPRQT  180
QNVSSSSSNS TNDDDTLFDL PDLFPDELCS YSSSWHLCAV GSGFRLEESL FWENY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-15721301372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang08g05310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017441350.11e-114PREDICTED: ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ75e-58ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0L9VUB01e-113A0A0L9VUB0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SVN31e-113A0A0S3SVN3_PHAAN; Uncharacterized protein
STRINGXP_007134514.16e-93(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-41ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]