PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang08g04650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 387aa MW: 41860.6 Da PI: 7.597 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.8 | 2.3e-09 | 251 | 298 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Vang08g04650.1 251 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 298 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.63E-16 | 245 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.35E-10 | 245 | 302 | No hit | No description |
PROSITE profile | PS50888 | 15.663 | 247 | 297 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-16 | 247 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-6 | 251 | 298 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-10 | 253 | 303 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MVSSPAASSN PSSNMSNDNF IIRELVGRLG AIGSSDEIPQ HSPHPLVVAS SYMNNGSGSP 60 NTSCYTTPLS SPPKVKTVQS LVNERLANLG GKSITLNSSV AEFSADPGFA ERAAKFSCFG 120 SRSFNGRNVQ LGVNNGELAQ RSASVVENGG KLSRISSSPL LKTLGSQMGT AENKNSAIRD 180 QEKDEGVEVS EDSNSKRTKP NEGEGNENGP VKVEEESKAV EDKQNKSNSK PPEPPKDYIH 240 VRARRGQATD SHSLAERVRR EKISERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ 300 VEVFQSNNSL ATHPNPTFPL DSSAQAFYGH QHQQNPVIHN NIPNRTVTHC SVDPLDTSLC 360 QNLAMQLPPL NGFNEVASQV QIMYPR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang08g04650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017441380.1 | 0.0 | PREDICTED: transcription factor bHLH62-like | ||||
TrEMBL | A0A0L9VU60 | 0.0 | A0A0L9VU60_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SW23 | 0.0 | A0A0S3SW23_PHAAN; Uncharacterized protein | ||||
STRING | XP_007134164.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2530 | 34 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 8e-76 | bHLH family protein |