PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang08g04510.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 219aa MW: 24762.4 Da PI: 9.6778 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.4 | 1.1e-10 | 99 | 141 | 2 | 51 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k + +W A I++ +k+++lg+ + eeAa ++++a++ Vang08g04510.2 99 FMRGVYY-K-NMKWQAAIKVD-----KKQIHLGTVESQEEAAHLYDRAAL 141 579**96.5.7*********4.....5*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.18E-8 | 100 | 144 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-7 | 101 | 146 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-4 | 101 | 143 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-4 | 101 | 156 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
LLCKLKLTMV SLRRRRLLGL CSGNSSFVTP LPLHCEHLTA TEASGQQVQN TIVKDEPGSS 60 NASGSSLSKE DSSQQSLGPP VKRRKQHLRK HAHDKEPCFM RGVYYKNMKW QAAIKVDKKQ 120 IHLGTVESQE EAAHLYDRAA LMCGREPNFE LQEEEKMELC KLKWEDFLAM TRQAIISKKH 180 KRKHSPEAKD VSMEVSVHSD DRKVVNLNQQ TTVSKDLS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 78 | 85 | PPVKRRKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang08g04510.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 1e-97 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017441745.1 | 1e-157 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
Refseq | XP_017441746.1 | 1e-157 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
Refseq | XP_017441747.1 | 1e-157 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
Refseq | XP_017441748.1 | 1e-157 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
TrEMBL | A0A0S3SW27 | 1e-155 | A0A0S3SW27_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA08G46250.4 | 1e-69 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 4e-43 | ERF family protein |