PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang08g02160.1

Common Name

LR48_Vigan11g105400

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

G2-like

Protein Properties

Length: 331aa MW: 37263.5 Da PI: 8.6806

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang08g02160.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.9	1.7e-31	61	114	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rFv+av++LGG+e+AtPk +l+lm++kgL+++hvkSHLQ++R+ Vang08g02160.1 61 PRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNMKGLSIAHVKSHLQMFRS 114 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.292	57	117	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-28	57	115	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.48E-14	60	115	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-22	61	116	IPR006447	Myb domain, plants
Pfam	PF00249	8.9E-9	62	112	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MGESRVSQCS KTSPSNIDEE ECESHANEDQ RKQNNNGGSS SNSTVEESEK KIRPYVRSKL 60 PRLRWTPDLH LRFVHAVQRL GGQERATPKL VLQLMNMKGL SIAHVKSHLQ MFRSKKVDDR 120 NQVFSDHTSL VEIGDKNIYN LSQLSMLQGY NPRQSSSYSY TNNIYPSYGF GDASFGSYEK 180 LVHRPFDWFN GMSRAGSSIS GEQSTSKTRE PKNELFSFGA YENLCTRFKH TPSNIIQQTA 240 QNLMPVNPTT ELKTLKRKAE DSSLDLDLSL KLNTKMDSEG TKLEDHEVHS NLSLSLCSQS 300 SSSNLSSRLK EAKDRCEEHG KRASTLDLTI *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-17	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-17	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	8e-17	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-17	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-17	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-17	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-17	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-17	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-17	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-17	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-17	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-17	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00297	DAP	Transfer from AT2G38300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang08g02160.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017441916.1	0.0	PREDICTED: two-component response regulator ARR18-like
TrEMBL	A0A0L9VSH7	0.0	A0A0L9VSH7_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SWY2	0.0	A0A0S3SWY2_PHAAN; Uncharacterized protein
STRING	XP_007134813.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2378	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-54	G2-like family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]