PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang08g01190.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YC
Protein Properties Length: 171aa    MW: 18614.5 Da    PI: 8.6688
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang08g01190.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC103.41.5e-322210419100
           NF-YC  19 helPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100
                     h+lPlarikki+k + +dvkmis eaP+++skacelfi elt rsw+ a + krrtl+k d+++a+  td fdfl+  v +++
  Vang08g01190.1  22 HSLPLARIKKIMKkSGDDVKMISGEAPIIFSKACELFIEELTRRSWIMAIQGKRRTLHKEDLTSAIIATDLFDFLITLVSNSD 104
                     99**********825689**********************************************************9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.39E-261796IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.7E-301987IPR009072Histone-fold
PfamPF008084.6E-202387IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MRQAGAYSGL LCGGVSGRTG PHSLPLARIK KIMKKSGDDV KMISGEAPII FSKACELFIE  60
ELTRRSWIMA IQGKRRTLHK EDLTSAIIAT DLFDFLITLV SNSDSHPLGG TTSTIETHSN  120
CILLVLLDFR QTRNSGEHLS NKTFASDLTI AFTSSDIWGT LVKSSVCREI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B5e-29221001693NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang08g01190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017408860.13e-80PREDICTED: nuclear transcription factor Y subunit C-2-like
TrEMBLA0A0L9TD236e-79A0A0L9TD23_PHAAN; Uncharacterized protein
STRINGXP_007135116.14e-75(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105592841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.22e-31nuclear factor Y, subunit C4