PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang08g00590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bZIP | ||||||||
Protein Properties | Length: 433aa MW: 46429.7 Da PI: 6.7935 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 69.9 | 4e-22 | 287 | 349 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv+ L+aeN +Lk+e+ +l++ ++++++e+ Vang08g00590.1 287 ERELKRERRKQSNRESARRSRLRKQAETEELARKVEMLTAENVSLKSEITKLTEGSEQMRMEN 349 89**********************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 3.3E-31 | 12 | 109 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 6.2E-25 | 143 | 266 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 7.5E-18 | 281 | 346 | No hit | No description |
Pfam | PF00170 | 7.9E-21 | 287 | 349 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 2.7E-21 | 287 | 351 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.036 | 289 | 352 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.13E-11 | 290 | 345 | No hit | No description |
CDD | cd14702 | 2.35E-20 | 292 | 340 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 294 | 309 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
LTRCFSSGDC LMGNSEEGKS VQTGSPSSPA TTDQANQTYQ PNIHVYPDWA AMQYYGPRVN 60 IPPYFNSTVA SGHAPHPFMW GPPQPMMPPY GPPYAAFYPP GGVYTHPAVA IGPHSHGQGV 120 PSPPAAGTPS SVDSPTKLSG NTDQGLMKKL KGFDGLAMSI GNCNAESAEL GAENRLSQSV 180 DTEGSSDGSD GNTAGANQTK MKRSREETST TGMTLIGVDK LIFGSSKIIV PTTPASIAGK 240 FVGPVISSGM TTALELRNSL TVHSKENLTS APQPCAAVPP EAWIQNEREL KRERRKQSNR 300 ESARRSRLRK QAETEELARK VEMLTAENVS LKSEITKLTE GSEQMRMENS AMREKLINTH 360 LGQREEIILE SIDSKRSTPV STENLLSRVN NSSSNDRSAD NESDFCENKP NSGAKLHQLL 420 DTNPRADAVA AG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 303 | 309 | RRSRLRK |
2 | 303 | 310 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00318 | DAP | Transfer from AT2G46270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang08g00590.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | PVU41817 | 0.0 | U41817.1 Phaseolus vulgaris regulator of MAT2 (ROM2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017410251.1 | 0.0 | PREDICTED: common plant regulatory factor 1-like isoform X3 | ||||
Swissprot | Q99089 | 1e-130 | CPRF1_PETCR; Common plant regulatory factor 1 | ||||
TrEMBL | A0A4D6MR71 | 0.0 | A0A4D6MR71_VIGUN; Plant G-box-binding factor | ||||
STRING | XP_007135192.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5301 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46270.1 | 1e-93 | G-box binding factor 3 |
Publications ? help Back to Top | |||
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