PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang08g00010.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 674aa    MW: 75027.6 Da    PI: 4.5257
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang08g00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-07561610147
                      TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                      r+ WT+eE++++ d+v+  ++      W+ I r ++  +++ +++s+++++
   Vang08g00010.1 561 RLMWTKEEEKKFEDVVRSNPPSlekyYWDYIFRAFP-DKSRAELVSYYFNV 610
                      678*****************88**************.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101116.26530123IPR001606ARID DNA-binding domain
SMARTSM010141.1E-1134119No hitNo description
SMARTSM005011.4E-1238124IPR001606ARID DNA-binding domain
SuperFamilySSF467743.27E-1541126IPR001606ARID DNA-binding domain
PfamPF013881.1E-856117IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.602.6E-1257128IPR001606ARID DNA-binding domain
SMARTSM011895.4E-6465515IPR000949ELM2 domain
CDDcd001670.00157564611No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010628Biological Processpositive regulation of gene expression
GO:0016575Biological Processhistone deacetylation
GO:0048235Biological Processpollen sperm cell differentiation
GO:0000118Cellular Componenthistone deacetylase complex
GO:0048555Cellular Componentgenerative cell nucleus
GO:0048556Cellular Componentmicrosporocyte nucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
LNSMSMAGRL QLYDGVREED SGEIFGGSND DSLCRFERLF AEFFSEICAF NCVLHYPPML  60
SDGQDVDLYR LFLVVRGKGG YDAVCKGKLW DSVGEESGMG VSVGSSVELV YSRYLSALDS  120
WMKKVAESKV SPEFGVVDDR DKFGRRLMEL QAEVEGLLSG CADERVVLVG EDVEGGLDED  180
DHNLDGRELS GANGVKSNGD EGGEHRQCDD SEMPDNDMDE AVLGNSDKGN DLMGGEEGFD  240
GGKMPEEQAV DISDGANKSG TGVVSGGKQC DDSDDKGLVL DASGGNSDDD SSGHKRKREG  300
SVWDSSSDDC DSPSRKRMRE SAMDMLSWIT GVAKDPGDPE VGSIPEKSKW KSYSSQEVWK  360
QVLLFREATF YRRGSEASNE QRNWQNQKMH PCLYEEQVGT NYNLRDRLKC DKKLLFGKSA  420
SLRSSSDSSL ATENRTPGSH TEGQSELRDS PDANSGLDKC ATVRIPLGTN HQAEIPEWTG  480
VTSESDSKWL GTRIWPQETV NTRLIERDPI GKGRQGSCGC PEEGSVECVR FHISEKRAKV  540
KLELGNAFYD WDFDRVGEEV RLMWTKEEEK KFEDVVRSNP PSLEKYYWDY IFRAFPDKSR  600
AELVSYYFNV FMLQRRGYQN RHTPDDIDSD DNDDEAGPLR NVFGPQIQNS GHEMQSSRGS  660
ILLTPKKTRK KGK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang08g00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017408386.10.0PREDICTED: AT-rich interactive domain-containing protein 2-like
TrEMBLA0A0S3SZ050.0A0A0S3SZ05_PHAAN; Uncharacterized protein
STRINGXP_007135094.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43731724