PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0867s00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 123aa MW: 13191.1 Da PI: 4.7207 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 57.7 | 3.5e-18 | 11 | 63 | 48 | 100 |
DUF260 48 alpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +lpe +r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal+++e Vang0867s00020.1 11 ELPEYQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAE 63 78999*******************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 10.741 | 1 | 64 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.2E-16 | 10 | 61 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MVKCPKIIPD ELPEYQRSDA VSSMVYEANA RVRDPVYGCV GAISSLQQQV DVLQTQLALA 60 QAEVVHMKLS QVSTSSEQLK AVPATSNSSS ENLSPSSKLA KTLFAMDMVV DQPNMGVSLW 120 SC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-19 | 10 | 84 | 57 | 131 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-19 | 10 | 84 | 57 | 131 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0867s00020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014490538.1 | 2e-74 | LOB domain-containing protein 4 | ||||
Refseq | XP_017406211.1 | 1e-74 | PREDICTED: LOB domain-containing protein 4-like | ||||
Swissprot | Q9SHE9 | 2e-27 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A0L9T7V0 | 3e-73 | A0A0L9T7V0_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SAJ9 | 3e-73 | A0A0S3SAJ9_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A1S3T9U5 | 3e-73 | A0A1S3T9U5_VIGRR; LOB domain-containing protein 4 | ||||
STRING | XP_007133379.1 | 7e-57 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1334 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 6e-20 | LOB domain-containing protein 4 |