PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g08210.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 658aa    MW: 72307 Da    PI: 6.2504
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g08210.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.9e-1960115156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++  +++t+ q+ee+e++F+++++p+ ++r+eL + lgL+  qVk+WFqN+R+++k
  Vang07g08210.1  60 KKGYRRHTQRQIEEMEAFFKQCPHPDDKQRKELGRDLGLEPLQVKFWFQNKRTQMK 115
                     577889***********************************************999 PP
2START111.81e-352474021137
                     HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++el ++a+a++ +Wv      e++n++++l++f+  +        ++ea+r+s+vv+m++ +l  +l+d++ qW++++     +a tl
  Vang07g08210.1 247 ELAVAAMEELTRLAQAGDSLWVPGNhhsEILNEEDYLRTFPNRGLgpkplaLRSEASRESVVVIMNHINLIDILMDVN-QWSTMFCgivsRALTL 340
                     57899*****************988889************77666*********************************.******999******* PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS-- CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkpp 137
                     ev+s+g      galq+m+ae+q++splvp R+ +fvRy++q+++g w++vdvS+d+ ++  
  Vang07g08210.1 341 EVLSTGvagnynGALQVMSAEFQVPSPLVPtRENYFVRYCKQQPDGIWAVVDVSLDNLRPMI 402
                     ********************************************************998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-2141115IPR009057Homeodomain-like
SuperFamilySSF466895.01E-1844117IPR009057Homeodomain-like
PROSITE profilePS5007116.26157117IPR001356Homeobox domain
SMARTSM003891.1E-1759121IPR001356Homeobox domain
CDDcd000867.17E-1760118No hitNo description
PfamPF000467.3E-1760115IPR001356Homeobox domain
PROSITE profilePS5084824.407238396IPR002913START domain
SuperFamilySSF559611.43E-19239396No hitNo description
CDDcd088754.95E-74242405No hitNo description
SMARTSM002345.1E-26247459IPR002913START domain
PfamPF018521.1E-27248402IPR002913START domain
SuperFamilySSF559612.38E-16406603No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MFHTNMFDSH PHMLDMSPHK TAFSETDLGK PRDDEYETKS GTDMDAPSGD DQDPNPRPRK  60
KGYRRHTQRQ IEEMEAFFKQ CPHPDDKQRK ELGRDLGLEP LQVKFWFQNK RTQMKTQHER  120
HENSILKAEN EKLRAENNRY KEALTNATCP NCGGPAALGE MSFDEQHLRI ENARLREEID  180
RISGIAAKYV GKPVTSSYSN LSSLNNNHMP VGNYGAQSGT VGEMYGGSDL LRSLPAPADA  240
DKPMIVELAV AAMEELTRLA QAGDSLWVPG NHHSEILNEE DYLRTFPNRG LGPKPLALRS  300
EASRESVVVI MNHINLIDIL MDVNQWSTMF CGIVSRALTL EVLSTGVAGN YNGALQVMSA  360
EFQVPSPLVP TRENYFVRYC KQQPDGIWAV VDVSLDNLRP MITSAEGRKS MLKLAERMVI  420
SYCTGVGAST AHAWTTLSAT GCDDVRVMTR KSTDEPGRPP GIVLSAATSF WLPVPPKRVF  480
DFLRDENSRN ESANSSQSNM LILQESCTDS TGSYVVYAPV DIVAMNVVLG GGDPDYVALL  540
PSGFAILPDG PGINGGSILD VGSGGSLLTV AFQILVDSAP TAKLSLGSVA TVNSLIKCTV  600
ERIKVACYNK GSRVEINKLR VVPIWFSEEG KKSMNAPRRI TSMVELGRIL GSGIDFH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang07g08210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023904570.10.0homeobox-leucine zipper protein MERISTEM L1-like isoform X2
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A118K0F50.0A0A118K0F5_CYNCS; Homeodomain-containing protein
STRINGXP_010101468.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2300644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  5. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  6. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  7. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  8. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]