PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g07170.1
Common NameLR48_Vigan442s010900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 179aa    MW: 19646.8 Da    PI: 5.3334
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g07170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.8e-171766255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    ++kGVr++k +g+Wv+eIr+p   g +  r +lg++ t+e Aa a++ a  +l+ 
  Vang07g07170.1 17 KFKGVRRRK-WGKWVSEIRVP---G-TqERLWLGTYVTPEAAAVAHDVAVYCLRR 66
                    89****998.**********8...3.35***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.96E-161770IPR016177DNA-binding domain
PfamPF008471.3E-91765IPR001471AP2/ERF domain
CDDcd000187.87E-151778No hitNo description
PROSITE profilePS5103220.6661776IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-241777IPR001471AP2/ERF domain
SMARTSM003801.6E-241782IPR001471AP2/ERF domain
PRINTSPR003673.9E-81829IPR001471AP2/ERF domain
PRINTSPR003673.9E-84056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MSKSSALHAI CPSRDHKFKG VRRRKWGKWV SEIRVPGTQE RLWLGTYVTP EAAAVAHDVA  60
VYCLRRPSSL DKLNLPDTLS SYSGQLRDMS PRSVQKVASD VGMDVDARNI AAGGSSSGVA  120
QSQESEKKME ERNGIVGADD SDEFWWNGFE GYDTATWKGS GEDCADRDAL NISIEDYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11824KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang07g07170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017407903.11e-130PREDICTED: ethylene-responsive transcription factor ERF020
SwissprotQ9C9I83e-38ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A0L9TAU61e-128A0A0L9TAU6_PHAAN; Uncharacterized protein
STRINGXP_007156998.15e-92(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54893054
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.19e-39ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]