PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g07070.1
Common NameLR48_Vigan442s012300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 351aa    MW: 39689.7 Da    PI: 6.3229
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g07070.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS242.12.3e-74492501209
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL+ cA+ v++g+le+a+ lL+++s+laspdgd++qR+aayft+ALa r+++++++l +al++++ +   +see+ ++klf++++P+lk+s+
  Vang07g07070.1  49 LIHLLIGCANQVANGSLENANMLLEQISQLASPDGDTIQRVAAYFTQALADRILKTWPGLHRALNSTRIA--MVSEEILVQKLFFDLFPFLKMSY 141
                     689*************************************************************999988..69********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +++NqaI+ea+ege++vH+iD++++ ++QW+aL++ L++Rpegpp+lRiTgv++    +ke l +++++L++ Ae+l++pf+fn+ v++++e+l+
  Vang07g07070.1 142 ILTNQAIVEAMEGEKMVHVIDLNATGPAQWVALFRVLSARPEGPPHLRITGVHH----QKEVLDQMAHKLTEEAEKLDIPFQFNP-VVSKIENLD 231
                     ******************************************************....9**************************.799****** PP

            GRAS 191 leeLrvkpgEalaVnlvlq 209
                     +++Lrvk+gEala++++lq
  Vang07g07070.1 232 FDKLRVKTGEALAISSILQ 250
                     ***************9987 PP
2GRAS1096.6e-34252347279374
            GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     s +r+k+E++llg+ei+n+vacegaerrerhe++ kW +rl+ +GF +vpls + ++qa + l++++ +gyr+ ee+gs+v++W+dr+L+sv+aW
  Vang07g07070.1 252 SLDRMKIEKMLLGEEIKNIVACEGAERRERHEKMDKWIQRLDLSGFANVPLSCQGVTQAMRFLENYGCNGYRMREENGSVVIYWQDRTLFSVTAW 346
                     679******************************************************************************************** PP

            GRAS 374 r 374
                     r
  Vang07g07070.1 347 R 347
                     8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.39323350IPR005202Transcription factor GRAS
PfamPF035148.1E-7249250IPR005202Transcription factor GRAS
PfamPF035142.3E-31252347IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MESVFQEEGS SSVTSSPLQF FSMMSLSPGI GSPYPWLREL KSEERGLYLI HLLIGCANQV  60
ANGSLENANM LLEQISQLAS PDGDTIQRVA AYFTQALADR ILKTWPGLHR ALNSTRIAMV  120
SEEILVQKLF FDLFPFLKMS YILTNQAIVE AMEGEKMVHV IDLNATGPAQ WVALFRVLSA  180
RPEGPPHLRI TGVHHQKEVL DQMAHKLTEE AEKLDIPFQF NPVVSKIENL DFDKLRVKTG  240
EALAISSILQ ASLDRMKIEK MLLGEEIKNI VACEGAERRE RHEKMDKWIQ RLDLSGFANV  300
PLSCQGVTQA MRFLENYGCN GYRMREENGS VVIYWQDRTL FSVTAWRSRR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-53333492380Protein SCARECROW
5b3h_D6e-53333492380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang07g07070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017407864.11e-180PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR81e-123SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A0L9TAX11e-179A0A0L9TAX1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T6F61e-179A0A0S3T6F6_PHAAN; Uncharacterized protein
STRINGXP_007158592.11e-173(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2149834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-126scarecrow-like 3
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  2. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  3. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  4. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]