PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g06850.2
Common NameLR48_Vigan401s004800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 330aa    MW: 35935.3 Da    PI: 8.6662
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g06850.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96e-19127177256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  Vang07g06850.2 127 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 177
                     59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.34E-17126186No hitNo description
SuperFamilySSF541711.7E-22127184IPR016177DNA-binding domain
SMARTSM003801.0E-35127190IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-31127185IPR001471AP2/ERF domain
PROSITE profilePS5103223.301127184IPR001471AP2/ERF domain
PRINTSPR003674.2E-10128139IPR001471AP2/ERF domain
PfamPF008473.3E-13128177IPR001471AP2/ERF domain
PRINTSPR003674.2E-10150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDGMQERNSQ LGTDIGSSLS KLILTSGSNT LDSIFSDCPP TNAASSNSVL DYLEPFGSSG  60
FEPLGSSVYL RQRDILQKFY QESRGNGNGN GNGNGSLLPT SLANPSINSL YTASLTSSLT  120
NPSKKKLYRG VRQRHWGKWV AEIRLPQNRM RVWLGTYDTA EAAAYAYDRA AYKLRGEYAR  180
LNFPNLKDPT KLGFGDSARL NALKSSVDAK IQAICQKVKR ERAKKIAAKK LSSATAHATR  240
KESEKINSSA SSSSSSLPLS PPSIFCDNWA NELFSPSVSE DGIWKGENSP TTVSTECQMM  300
VTDETEFEGC SLARLPSFDP ELIWEVLAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-20126184160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-20123184163ATERF1
3gcc_A6e-20123184163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang07g06850.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017407212.10.0PREDICTED: ethylene-responsive transcription factor ERF061
SwissprotQ9C7W24e-69ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A0L9T9850.0A0A0L9T985_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T6030.0A0A0S3T603_PHAAN; Uncharacterized protein
STRINGXP_007158572.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.11e-57ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]