PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang07g06850.1 | ||||||||
Common Name | LR48_Vigan401s004800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 286aa MW: 31309.2 Da PI: 9.2863 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.8e-19 | 97 | 147 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p + r r++lg+++tae Aa a+++a+ kl+ge Vang07g06850.1 97 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 147 59******9.**********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.71E-17 | 96 | 156 | No hit | No description |
SMART | SM00380 | 1.0E-35 | 97 | 160 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-31 | 97 | 155 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-22 | 97 | 154 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.301 | 97 | 154 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-10 | 98 | 109 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-13 | 98 | 147 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-10 | 120 | 136 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
LDSIFSDCPP TNAASSNSVL DYLEPFGSSG FEPLGSSVYL RQRDILQKFY QESRGNGNGN 60 GNGNGSLLPT SLANPSINSL YTASLTSSLT NPSKKKLYRG VRQRHWGKWV AEIRLPQNRM 120 RVWLGTYDTA EAAAYAYDRA AYKLRGEYAR LNFPNLKDPT KLGFGDSARL NALKSSVDAK 180 IQAICQKVKR ERAKKIAAKK LSSATAHATR KESEKINSSA SSSSSSLPLS PPSIFCDNWA 240 NELFSPSVVS TECQMMVTDE TEFEGCSLAR LPSFDPELIW EVLAV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-20 | 93 | 154 | 1 | 63 | ATERF1 |
3gcc_A | 6e-20 | 93 | 154 | 1 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang07g06850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017407212.1 | 1e-169 | PREDICTED: ethylene-responsive transcription factor ERF061 | ||||
Swissprot | Q9C7W2 | 6e-62 | ERF61_ARATH; Ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | A0A0L9T985 | 1e-168 | A0A0L9T985_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T603 | 1e-168 | A0A0S3T603_PHAAN; Uncharacterized protein | ||||
STRING | XP_007158572.1 | 1e-156 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64380.1 | 4e-46 | ERF family protein |
Publications ? help Back to Top | |||
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