PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang07g06110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 763aa MW: 85928.7 Da PI: 7.9015 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99 | 3.4e-31 | 245 | 299 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGGse+AtPk+il++m+ +gLt+ hvkSHLQkYR+ Vang07g06110.1 245 KTRIRWTKDLHEKFVECVNRLGGSEQATPKAILKMMDTDGLTIFHVKSHLQKYRI 299 68****************************************************7 PP | |||||||
2 | G2-like | 74.1 | 1.9e-23 | 571 | 625 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r++Wt +LHe F+ v++LGG+ekA Pk+il++mk + L+++hvkSHLQk R+ Vang07g06110.1 571 KRRIKWTDDLHEPFMMIVNSLGGPEKAKPKAILDMMKSDLLSISHVKSHLQKCRS 625 689*************************************************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.655 | 242 | 302 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.11E-16 | 243 | 299 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 243 | 300 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.5E-23 | 245 | 300 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-8 | 249 | 298 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-20 | 569 | 627 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.13E-10 | 570 | 627 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.7E-18 | 571 | 625 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 763 aa Download sequence Send to blast |
MNENKVHWGG LIQQSHGLSG DFNSEFGNHY CQYFDIRQPW NMGPLAMVGR EATDQLPNIG 60 HVKSSGTIIS RFESPASAFY AAENCMGFAE YDCQLGVQSQ LCKINDSEFP LYQSPRDNLF 120 LDSANQPDLS YDFSNTLQSI VKSQFNNDQC RVSPEKFNKI SCGNFPTTKF LPIEQQKLFI 180 DGVIRGSSFP NKGIQDRTVA RGSFDLPVAH MRFSSQIEKL SPTLSAGSVS TVGNSASNGA 240 AVSSKTRIRW TKDLHEKFVE CVNRLGGSEQ ATPKAILKMM DTDGLTIFHV KSHLQKYRIA 300 KFIPEPSQGK SDKRSHIKNV HHLDVKTGLQ IREALKLQLD AQRCLHEQLE RSMYQCSSQM 360 YGTDWEYMGI SNLAKVVGSD QILEPKSSPF NIVTTPLQIQ TPQGFCATAT KGLVSFQAQQ 420 HAHHQHQIEV PAWCFDSNML NICQASGDNF TTKQDPPSSQ FTSSLCPVAE SFLSSSTGAD 480 CPSSSEKYCK ITSYSEKHSS MQPDGMPYYD HFSQEEDKLL RDDAATDERP LEISFQRNQL 540 ESCTKPQKQA PHRLCGVACV TSSNSASRRG KRRIKWTDDL HEPFMMIVNS LGGPEKAKPK 600 AILDMMKSDL LSISHVKSHL QKCRSTINMH KALQGKLLLS LPWCYITVMH IPSEIPQNIF 660 LLNCTIGKLN WSENRKLPLC LSEKSEEGQR MDGVAELQVK IHMQIEESRQ LQLEVRRNIC 720 QQLEMQRNLQ MLIQQQSQQL KVMFDYQKKK PKLDTELEAT VP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-23 | 245 | 625 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-23 | 245 | 625 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-23 | 245 | 625 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-23 | 245 | 625 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-23 | 245 | 625 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-23 | 245 | 625 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-23 | 245 | 625 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-23 | 245 | 625 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang07g06110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017411430.1 | 0.0 | PREDICTED: uncharacterized protein LOC108323469 | ||||
TrEMBL | A0A4D6M8A4 | 0.0 | A0A4D6M8A4_VIGUN; Two-component response regulator ARR-B family | ||||
STRING | XP_007162313.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3740 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06800.2 | 1e-49 | G2-like family protein |