PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang07g05950.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 443aa MW: 49414.7 Da PI: 9.3913 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40 | 6.9e-13 | 370 | 415 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ k s ae+L +Av+YIk+Lq Vang07g05950.2 370 SIAERVRRTRISERIRKLQELVPNM----EKQTSTAEMLDLAVDYIKNLQ 415 689*********************7....477*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.459 | 364 | 414 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.53E-16 | 367 | 431 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.81E-13 | 368 | 417 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.4E-14 | 369 | 427 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.1E-10 | 370 | 415 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-11 | 370 | 420 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
LSHQAFPFPS HLGYFQNLFD FHHNDSLASH INITFTPFST DYQTMDSNSR YQVQQQHQPN 60 SGLLRFRSAP TQVLSNFKQG EASSINANPW EGSEPLLRFF NSGDTLDTTS PTIREFVDNK 120 DSNENKQPKE STISSSSPSL SPLSRMNSQQ GYSTSVLPSR YPRHDSTVTV SSSMMVGSVG 180 MDQGGKSFNP NLLRQSSFPS GNFSNSISFH NGYDGMRGVE NFGGVNGSDG EHRISMNRMK 240 NHISFSPRSP SSLGILSPTS KMGTEGLRVT SPEDGRHGGS NGDARYYGPG FPYTSWNETS 300 NPKRQRNSND ELLSEAQNGD LGNQVHSLSY HLSLPRASSE MFAMDNLLQF NDSVPCKIRA 360 KRGFATHPRS IAERVRRTRI SERIRKLQEL VPNMEKQTST AEMLDLAVDY IKNLQNQFKN 420 LSERRAKCKC INMQKPETDK IA* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00308 | DAP | Transfer from AT2G42280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang07g05950.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017416230.1 | 0.0 | PREDICTED: transcription factor bHLH130-like | ||||
Refseq | XP_017416231.1 | 0.0 | PREDICTED: transcription factor bHLH130-like | ||||
Refseq | XP_017416232.1 | 0.0 | PREDICTED: transcription factor bHLH130-like | ||||
TrEMBL | A0A0L9U8L5 | 0.0 | A0A0L9U8L5_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RXH8 | 0.0 | A0A0S3RXH8_PHAAN; Uncharacterized protein | ||||
STRING | XP_007162279.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 3e-59 | bHLH family protein |