PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g05950.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 443aa    MW: 49414.7 Da    PI: 9.3913
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g05950.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH406.9e-13370415655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+      k  s ae+L +Av+YIk+Lq
  Vang07g05950.1 370 SIAERVRRTRISERIRKLQELVPNM----EKQTSTAEMLDLAVDYIKNLQ 415
                     689*********************7....477*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.459364414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-16367431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.81E-13368417No hitNo description
Gene3DG3DSA:4.10.280.109.4E-14369427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-10370415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-11370420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
LSHQAFPFPS HLGYFQNLFD FHHNDSLASH INITFTPFST DYQTMDSNSR YQVQQQHQPN  60
SGLLRFRSAP TQVLSNFKQG EASSINANPW EGSEPLLRFF NSGDTLDTTS PTIREFVDNK  120
DSNENKQPKE STISSSSPSL SPLSRMNSQQ GYSTSVLPSR YPRHDSTVTV SSSMMVGSVG  180
MDQGGKSFNP NLLRQSSFPS GNFSNSISFH NGYDGMRGVE NFGGVNGSDG EHRISMNRMK  240
NHISFSPRSP SSLGILSPTS KMGTEGLRVT SPEDGRHGGS NGDARYYGPG FPYTSWNETS  300
NPKRQRNSND ELLSEAQNGD LGNQVHSLSY HLSLPRASSE MFAMDNLLQF NDSVPCKIRA  360
KRGFATHPRS IAERVRRTRI SERIRKLQEL VPNMEKQTST AEMLDLAVDY IKNLQNQFKN  420
LSERRAKCKC INMQKPETDK IA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang07g05950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416230.10.0PREDICTED: transcription factor bHLH130-like
RefseqXP_017416231.10.0PREDICTED: transcription factor bHLH130-like
RefseqXP_017416232.10.0PREDICTED: transcription factor bHLH130-like
TrEMBLA0A0L9U8L50.0A0A0L9U8L5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RXH80.0A0A0S3RXH8_PHAAN; Uncharacterized protein
STRINGXP_007162279.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-59bHLH family protein