PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang07g05630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 281aa MW: 30973.3 Da PI: 8.3951 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00088 | 216 | 238 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg Fs+ +L+ H H Vang07g05630.1 216 SCPQCGVKFSSAISLVDHVLQvH 238 6*****************87666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1110.10 | 1.4E-9 | 81 | 137 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 4.12E-8 | 83 | 135 | No hit | No description |
Pfam | PF01428 | 8.6E-8 | 91 | 131 | IPR000058 | Zinc finger, AN1-type |
PROSITE profile | PS50157 | 8.871 | 215 | 243 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.052 | 215 | 238 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 217 | 238 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 6.4 | 251 | 274 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 253 | 274 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MFIFGHTEVT RVTEWKRPNK NQLIYCLEHR GYIEHKCTKP NKEDVKVVIC PLCAKGVRLI 60 PDQDPNIAWD HHVNIDCDPS NYQKVTKKRK CPAPGCREVL VFSNTIKCRD CLEDHCLKHR 120 FGPDHKCSGP KKLEKSFSFM SLFNTIKKEE PKPNLTSTAS SKWTSSFLSV ASNIRASAEA 180 SMSKLSNEIN QVWLAARDSA GPNSGSGNKN DLQEESCPQC GVKFSSAISL VDHVLQVHES 240 NGKPVGVKKI EACPKCSGGF VDPVSLVEHV ERDHGGGSGA * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang07g05630.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017418004.1 | 0.0 | PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like | ||||
Swissprot | Q0D5B9 | 1e-85 | SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 | ||||
TrEMBL | A0A0L9U7I5 | 0.0 | A0A0L9U7I5_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RXE6 | 0.0 | A0A0S3RXE6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007162230.1 | 1e-159 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5864 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41835.1 | 2e-85 | C2H2 family protein |
Publications ? help Back to Top | |||
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