PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang07g04940.1 | ||||||||
Common Name | LR48_Vigan03g223300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 204aa MW: 22879.8 Da PI: 7.985 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.2 | 5.1e-17 | 50 | 104 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Le+ F+++ +++ +++ LAk+l+L rqV vWFqNrRa+ k Vang07g04940.1 50 RKKLRLSKTQSAFLEDSFKEHTTLNPKQKLVLAKELNLRPRQVEVWFQNRRARTK 104 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 125.7 | 2e-40 | 50 | 139 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk q+++LE+sF+e+++L+p++K la+eL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l Vang07g04940.1 50 RKKLRLSKTQSAFLEDSFKEHTTLNPKQKLVLAKELNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLSEENKRLQKELQELR-AL 139 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.601 | 46 | 106 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.13E-18 | 47 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 7.2E-15 | 48 | 110 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.86E-14 | 50 | 107 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-16 | 50 | 104 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.6E-14 | 50 | 104 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 81 | 104 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 6.8E-11 | 106 | 140 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 9.1E-23 | 106 | 149 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MEDTPVRALD DTDDGAAVSS PNNSAVSSFC RNSRKFFEGD SEEDENGSTR KKLRLSKTQS 60 AFLEDSFKEH TTLNPKQKLV LAKELNLRPR QVEVWFQNRR ARTKLKQTEV DCEYLKRCCE 120 SLSEENKRLQ KELQELRALK TCEPFFMQLP ATTLTMCPSC ERVATTTSAA ASATNNDRVS 180 LNKPRILSGP HAAGLHGPSE CFF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 48 | 54 | TRKKLRL |
2 | 98 | 106 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang07g04940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-172 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017418134.1 | 1e-148 | PREDICTED: homeobox-leucine zipper protein HAT14 | ||||
Swissprot | P46665 | 1e-75 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A0L9U7Z0 | 1e-146 | A0A0L9U7Z0_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RXN9 | 1e-146 | A0A0S3RXN9_PHAAN; Uncharacterized protein | ||||
STRING | XP_007162339.1 | 1e-114 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2335 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 3e-75 | homeobox from Arabidopsis thaliana |
Publications ? help Back to Top | |||
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