PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang07g04930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 223aa MW: 24964.6 Da PI: 7.4287 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00049 | 124 | 146 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k+F+++ L +H + + Vang07g04930.1 124 HQCQSCQKTFRSSRALGSHRSIC 146 79*****************9876 PP | |||||||
2 | zf-C2H2 | 12.3 | 0.00053 | 156 | 178 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F + L H r+H Vang07g04930.1 156 FECPFCSKVFGSGQALGGHKRSH 178 89**************9999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.10.370.10 | 3.7E-4 | 112 | 165 | No hit | No description |
SuperFamily | SSF57667 | 6.82E-8 | 122 | 178 | No hit | No description |
Pfam | PF13912 | 0.002 | 124 | 143 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 70 | 124 | 144 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.3E-12 | 156 | 179 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.028 | 156 | 178 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.097 | 156 | 178 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 158 | 178 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MKKKSYSIGA RLADPEFDSG AVVQDRESET ESKNPTRRRS KRPRRPANSQ PKARPKLSFM 60 ESPEPVSSVS DTSPEEDVAM CLMMLSRDRW SKNTHAAVDN NNPVEDEEER SLEEIKFRRV 120 RRKHQCQSCQ KTFRSSRALG SHRSICEGSG NDSKIFECPF CSKVFGSGQA LGGHKRSHMV 180 PSSSSTANDS TRFKESFIDL NFPAPPEEED DLSVVSDAQF DD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang07g04930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014520182.1 | 1e-139 | zinc finger protein ZAT9-like | ||||
TrEMBL | A0A0S3T5G4 | 1e-152 | A0A0S3T5G4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007157307.1 | 1e-116 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 5e-33 | C2H2-like zinc finger protein |