PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g03590.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 246aa    MW: 27450.9 Da    PI: 6.3167
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g03590.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.12.5e-071211364156
                     HHHHHHHHHHHHHHHH CS
        Homeobox  41 erqVkvWFqNrRakek 56 
                      rqV vWFqNrRa+ k
  Vang07g03590.2 121 ARQVEVWFQNRRARTK 136
                     69************98 PP
2HD-ZIP_I/II71.71.5e-231201713991
     HD-ZIP_I/II  39 qprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     ++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Vang07g03590.2 120 EARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVRELR-AL 171
                     58***********************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046183.4E-185098IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.607.0E-6121141IPR009057Homeodomain-like
PfamPF000469.7E-5121136IPR001356Homeobox domain
SuperFamilySSF466891.03E-5121146IPR009057Homeodomain-like
PROSITE profilePS500719.264122138IPR001356Homeobox domain
CDDcd000866.51E-4122139No hitNo description
SMARTSM003401.4E-26138181IPR003106Leucine zipper, homeobox-associated
PfamPF021834.9E-11138172IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MIVMRKVLVR EGTKEGDTHE FVREVGPAVE VEAVVGARVM EEAMLVHVSW GSSGEAGSFL  60
RGIDVNRLPS AVDCEEEAGV SSPNSTVSSV SEKRSEREAN GEEEHDTERG CFRGISDEEE  120
ARQVEVWFQN RRARTKLKQT EVDCEFLKRC CENLTEENRR LQKEVRELRA LKLSPQFYMH  180
MTPPTTLTMC PSCERVAVPP SAAVDAAARH RHVPQTHSRA FPIGPWATSA APISHRPFDA  240
LRPRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130138RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang07g03590.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519357.11e-131homeobox-leucine zipper protein HAT4
SwissprotP466012e-66HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLA0A0S3T6441e-131A0A0S3T644_PHAAN; Uncharacterized protein
STRINGXP_007157265.11e-125(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.11e-56homeobox protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]