PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang07g03530.1 | ||||||||
Common Name | LR48_Vigan06g014600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 26971.2 Da PI: 8.4799 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.7 | 1.6e-19 | 99 | 149 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+++g r++lg+f ta eAaka+++a+ +++g Vang07g03530.1 99 HYRGVRQRP-WGKFAAEIRDPNKRG--SRVWLGTFETALEAAKAYDRAAFRFRG 149 7********.**********96655..************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.7E-32 | 98 | 158 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.86E-22 | 99 | 158 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-13 | 99 | 149 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-37 | 99 | 163 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.434 | 99 | 157 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.20E-29 | 99 | 157 | No hit | No description |
PRINTS | PR00367 | 1.7E-13 | 100 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-13 | 139 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MDQFFSDFFD FPTTSTEHQF SRFEIESKPQ IIDHQTPNPH PQTSTSDFTF PNTHDRKKPQ 60 SNRKKSLQIS LPQKTEWIQF GEGEVAGKVV QQAAEEKRHY RGVRQRPWGK FAAEIRDPNK 120 RGSRVWLGTF ETALEAAKAY DRAAFRFRGS KAILNFPLEA GADNRKRQRE EEEPVVEVVK 180 REKVEDFDVT CIRDAPLTPS SWPGFWGSDA NGIFAVPPLS PLSPHPALGY PQLMVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-30 | 98 | 158 | 4 | 64 | ATERF1 |
3gcc_A | 2e-30 | 98 | 158 | 4 | 64 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00549 | DAP | Transfer from AT5G47230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang07g03530.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017426547.1 | 1e-176 | PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor 6-like | ||||
Swissprot | O80341 | 5e-61 | EF102_ARATH; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A0L9UPK6 | 1e-174 | A0A0L9UPK6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007157260.1 | 1e-126 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1085 | 34 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17490.1 | 3e-53 | ethylene responsive element binding factor 6 |
Publications ? help Back to Top | |||
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