PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang07g03460.1 | ||||||||
Common Name | LR48_Vigan06g013500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB | ||||||||
Protein Properties | Length: 180aa MW: 20755.6 Da PI: 9.8634 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 65.7 | 8.3e-21 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l+++++ +G ++WktIa + g++R++k+c++rw++yl Vang07g03460.1 10 RGAWTAEEDQRLAQCIEIHGAKRWKTIAVKSGLNRCGKSCRLRWLNYL 57 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.7 | 4.9e-17 | 63 | 107 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + eE++l+++++k+lG++ W++Ia++++ gRt++++k++w++ Vang07g03460.1 63 RGNISVEEEDLIIRLHKLLGNR-WALIAKRLP-GRTDNEIKNYWNTC 107 78999*****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.949 | 5 | 57 | IPR017930 | Myb domain |
SMART | SM00717 | 9.9E-16 | 9 | 59 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.26E-30 | 10 | 104 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.2E-18 | 10 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-24 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.89E-11 | 12 | 57 | No hit | No description |
PROSITE profile | PS51294 | 25.468 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 8.2E-15 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.4E-16 | 63 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-25 | 65 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.40E-11 | 67 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0048629 | Biological Process | trichome patterning | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MASPKKTNSR GAWTAEEDQR LAQCIEIHGA KRWKTIAVKS GLNRCGKSCR LRWLNYLRPN 60 IKRGNISVEE EDLIIRLHKL LGNRWALIAK RLPGRTDNEI KNYWNTCLCK KVNHHKKVKP 120 ETSMAQPTHS TQNTEEKVAV EHKVATDDGN GYSEVNFDFN EFFNFSIEGL YSFDWFRSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-30 | 10 | 112 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-30 | 10 | 112 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-30 | 10 | 112 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang07g03460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-161 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017426188.1 | 1e-133 | PREDICTED: transcription factor MYB114-like | ||||
Swissprot | P10290 | 1e-48 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | A0A0L9UQK8 | 1e-132 | A0A0L9UQK8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T5E4 | 1e-132 | A0A0S3T5E4_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA01G41610.2 | 1e-104 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2148 | 32 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 2e-50 | myb domain protein 66 |