PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g03340.1
Common NameLR48_Vigan06g021400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 328aa    MW: 36364.6 Da    PI: 10.2124
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g03340.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH382.9e-12150197355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+h ++Er+RR+++ +++  L  l+P +     kK++Ka++L  Av+Y+k+Lq
  Vang07g03340.1 150 RNHIIAERKRRQKVSQGLIALAALIPGL-----KKMDKASVLGDAVRYVKDLQ 197
                     579*************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.716147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-16150211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.93E-11150201No hitNo description
PfamPF000106.7E-10150197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-15151216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-13153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MFRQCLEDDH ELLSLEIASA LENLPLPQHQ QPLFSESHML YSETTNFNSS INQPKTNLCS  60
WNSTPISTKH FSPKLSSSSS SSSSPPSQIM FLNNSNSLSV ENTQFQGIVS AALSPPQQNK  120
GVSVSIPENG TRSSKNLKDK GIRKTSGHGR NHIIAERKRR QKVSQGLIAL AALIPGLKKM  180
DKASVLGDAV RYVKDLQERL KNLEGKNKKK RDEKSEVVMV KKPRLSYHDG SASGDGDGCF  240
RESLPRVEAR VSEKDVLLRI HCEKRKGLLL KMLVEIQNLH LFVVNSSVLR FGDSNLDITI  300
VAQMGTEYNL TINDLVKNLR MATLKST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-10151217874Transcription factor MYC2
5gnj_B1e-10151217874Transcription factor MYC2
5gnj_E1e-10151217874Transcription factor MYC2
5gnj_F1e-10151217874Transcription factor MYC2
5gnj_G1e-10151217874Transcription factor MYC2
5gnj_I1e-10151217874Transcription factor MYC2
5gnj_M1e-10151217874Transcription factor MYC2
5gnj_N1e-10151217874Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang07g03340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017426967.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A0L9UQ970.0A0A0L9UQ97_PHAAN; Uncharacterized protein
STRINGXP_007156672.11e-139(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-48bHLH family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]