PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g03330.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 403aa    MW: 45226.2 Da    PI: 9.5462
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g03330.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32.1e-11230277355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h ++Er+RR+++ ++f  L  +lP +     kK++Ka++L  A++Y+k+L+
  Vang07g03330.1 230 QEHVIAERKRREKLSQRFIALSAVLPGL-----KKMDKASVLGDAIKYVKQLR 277
                     6799************************.....9*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.504227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-9230276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15231289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15231292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-11232281No hitNo description
SMARTSM003532.1E-13233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MKRVRCPLYK TFPTTSFFSS PNFTTLISSL QSPPSPPLFE FSIQGLYKRR KLKMMEIAST  60
NYLPELEMEY PIFLDQYQMD SFACPLDDFD FESFSGSPES NSSYRLNSET TLNCFPAQSS  120
DQSFTPPRPT KRLKNTFNTF KTCAGDSIPH NVSASPSSQF ISFGHFNASP RASQQFHNFH  180
VKPKSENPSS EHMDFTDFVS QGSYQDKTFF SSDNRTNQVG LTTRNPIQAQ EHVIAERKRR  240
EKLSQRFIAL SAVLPGLKKM DKASVLGDAI KYVKQLRERV KNLEEKSAKT TTGSSVLVKR  300
SILFADGENS DSHCANSLPE IEVRVSGKDV LIRTQSDKHS GRAAVILSEL EKLQFIVQSS  360
SLLPFGNNNI DVTIIAQMKE NYMAAKDLLG RLRKALKQVD GA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13232286963Transcription factor MYC2
5gnj_B2e-13232286963Transcription factor MYC2
5gnj_E2e-13232286963Transcription factor MYC2
5gnj_F2e-13232286963Transcription factor MYC2
5gnj_G2e-13232286963Transcription factor MYC2
5gnj_I2e-13232286963Transcription factor MYC2
5gnj_M2e-13232286963Transcription factor MYC2
5gnj_N2e-13232286963Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235240ERKRRE
2236241RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang07g03330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017426195.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A0L9UQT90.0A0A0L9UQT9_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T6580.0A0A0S3T658_PHAAN; Uncharacterized protein
STRINGXP_007156673.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-54bHLH family protein