PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g03000.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 607aa    MW: 68017.9 Da    PI: 7.0357
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g03000.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.88.5e-11377421855
             AP2   8 wdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Vang07g03000.1 377 RHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 421
                     78899******988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.207258326IPR001471AP2/ERF domain
CDDcd000183.85E-11286326No hitNo description
SMARTSM003804.8E-5287332IPR001471AP2/ERF domain
PRINTSPR003671.8E-5288299IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-8290328IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-9291327IPR001471AP2/ERF domain
CDDcd000181.22E-22361431No hitNo description
PROSITE profilePS5103218.465362429IPR001471AP2/ERF domain
SMARTSM003801.0E-27362435IPR001471AP2/ERF domain
PfamPF008471.1E-5377421IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-14377430IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.2E-15377429IPR001471AP2/ERF domain
PRINTSPR003671.8E-5411431IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
LLASEVKYST DTQSIYKIMK PVENGETVDI NYQNSWLGFS LSPQMNITVP SHSHQTHPSS  60
AAAAETVPPT YYHHTPLHNY GILGEHVGMF SSLPIVPLKS NVSFYGIEAI SRSQAQEMAT  120
TSAIPLSLDS MFYNQLSYHG SNDPNNQNHV QENISKQQPP YYSSLRNNHD VILEGSKQQL  180
PCIAEDEVAC LKSWFSRDFP ACQAQESRMF VPLEDNGSKS GPNIGSITYG DLHSLNLSVS  240
PTRPSSRVTG SPAINDTKKR GLEMVDQNQK KIVHRKSIDT FGQRTSQYRG VTRSVLGGYD  300
MEEKAARAYD MAALKYWGPS SHINFPLENY QNELEEMKNM TRQEYVAHLR RKSSGFSRGA  360
SMYRGVTRSH RLAFTFRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR  420
GVNAVTNFDI TRYDVEKIMA SDNLLSSEQA KRSREKEDGT RNEAFVNQNP CAYEHNKETI  480
VMQKSCKMVP YPPHQQLDQN PPRIESCRTH SFSTAIDNIF HQEVEESSNM GTHLSNPSSL  540
VTSLSSSREE SPDKTSLPML FGMPSTVSKL FTNIPTSDGD SWELSSNLRP ALSLPQMPIF  600
ASWTDA*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang07g03000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017426593.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1 isoform X1
SwissprotQ84Z021e-111CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0S3T5C20.0A0A0S3T5C2_PHAAN; Uncharacterized protein
STRINGXP_007156691.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-100AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]