PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang07g02240.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | AP2 | ||||||||
Protein Properties | Length: 522aa MW: 57683.6 Da PI: 6.5594 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.4 | 1.3e-11 | 181 | 236 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng..kr..krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d+ g ++ + +g f+ta Aa+a+++a+ k++g Vang07g02240.3 181 SQYRGVTFYRRTGRWESHIWDC---GkqVYlgEYSLCGGFDTAHAAARAYDRAAIKFRG 236 78*******************5...223223366666778****************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.37E-12 | 181 | 245 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.0E-6 | 181 | 236 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-27 | 182 | 250 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.132 | 182 | 244 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-12 | 182 | 244 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.008 | 233 | 323 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-5 | 288 | 329 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.66E-13 | 290 | 325 | No hit | No description |
SuperFamily | SSF54171 | 4.25E-8 | 290 | 325 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-10 | 291 | 323 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 522 aa Download sequence Send to blast |
MRSHGPSPPN LIINNYNLTK PISQRHSKET SRMWDLNDSP DQRKDYESEG CSSLDDDKGR 60 RVGYVSNSSS SAVVLDDGLE EEDSDRGGSR TLERKSSKIF GFSVTHNDSD HPPVTQQFFS 120 VEDSDLPVSE AAPTDCGGSS FPRAHWVGVK FRQSETLGPG KSVKMSEPIK KSRRGPRSRS 180 SQYRGVTFYR RTGRWESHIW DCGKQVYLGE YSLCGGFDTA HAAARAYDRA AIKFRGVEAD 240 INFNIEDYEE DLKQVGRGRD SVESYLSYLD QSRDSLSPTP LIVLFCLSWY VYLGLFDTEI 300 EAARAYDKAA IKCNGKEAVT NFDPSIYDNE LNSDSSGVAA DHNLDLSLGN LSSRRGNGQI 360 SGNHFPNSAS DQHLPSASNW QNGGTKPKLV NILPKPCDRS NMETYARDWL GESETLRLLN 420 QTHLQSPTTK EMHRYGPYRS PAEPQLSHSF AILHPPNFHV GAPSLINILV PSSSSNGGRI 480 GSDLSLSMSD QQQWQAGHPH LLATAAASSG FPPQIRPSLS W* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang07g02240.3 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017427729.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 | ||||
Swissprot | P47927 | 1e-78 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A0L9UR09 | 0.0 | A0A0L9UR09_PHAAN; Uncharacterized protein | ||||
STRING | XP_007156779.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 7e-80 | AP2 family protein |