PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang07g02240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | AP2 | ||||||||
Protein Properties | Length: 490aa MW: 54027.4 Da PI: 5.9985 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36 | 1.7e-11 | 149 | 204 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng..kr..krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d+ g ++ + +g f+ta Aa+a+++a+ k++g Vang07g02240.1 149 SQYRGVTFYRRTGRWESHIWDC---GkqVYlgEYSLCGGFDTAHAAARAYDRAAIKFRG 204 78*******************5...223223366666778****************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.57E-12 | 149 | 213 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.2E-7 | 149 | 204 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.132 | 150 | 212 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-12 | 150 | 212 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-27 | 150 | 218 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.008 | 201 | 291 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-5 | 256 | 297 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.92E-8 | 258 | 293 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.46E-13 | 258 | 293 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.0E-10 | 259 | 291 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MWDLNDSPDQ RKDYESEGCS SLDDDKGRRV GYVSNSSSSA VVLDDGLEEE DSDRGGSRTL 60 ERKSSKIFGF SVTHNDSDHP PVTQQFFSVE DSDLPVSEAA PTDCGGSSFP RAHWVGVKFR 120 QSETLGPGKS VKMSEPIKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGEYS 180 LCGGFDTAHA AARAYDRAAI KFRGVEADIN FNIEDYEEDL KQVGRGRDSV ESYLSYLDQS 240 RDSLSPTPLI VLFCLSWYVY LGLFDTEIEA ARAYDKAAIK CNGKEAVTNF DPSIYDNELN 300 SDSSGVAADH NLDLSLGNLS SRRGNGQISG NHFPNSASDQ HLPSASNWQN GGTKPKLVNI 360 LPKPCDRSNM ETYARDWLGE SETLRLLNQT HLQSPTTKEM HRYGPYRSPA EPQLSHSFAI 420 LHPPNFHVGA PSLINILVPS SSSNGGRIGS DLSLSMSDQQ QWQAGHPHLL ATAAASSGFP 480 PQIRPSLSW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang07g02240.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017427729.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 | ||||
Swissprot | P47927 | 9e-79 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A0L9UR09 | 0.0 | A0A0L9UR09_PHAAN; Uncharacterized protein | ||||
STRING | XP_007156779.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 3e-80 | AP2 family protein |