PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang07g02020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HSF | ||||||||
Protein Properties | Length: 218aa MW: 24824.4 Da PI: 8.3652 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 86.1 | 4.7e-27 | 43 | 110 | 2 | 69 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SS CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdee 69 Fl+k+ye+++d+ ++e+isws++gn+fvv+++ efak++Lpk Fkh+nf+SFvRQLn+Y kk +++ Vang07g02020.1 43 FLTKTYELVDDPGTNEVISWSDSGNTFVVWKHAEFAKDLLPKCFKHNNFSSFVRQLNTYKLKKDNETL 110 9***********************************************************99977654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.7E-28 | 34 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.4E-31 | 39 | 145 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.31E-24 | 40 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.7E-23 | 43 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.0E-17 | 43 | 66 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.0E-17 | 81 | 93 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.0E-17 | 94 | 106 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MFGSVLYKSL SRPRILEEEN NKSIHEEICE GEIMSQRSVP APFLTKTYEL VDDPGTNEVI 60 SWSDSGNTFV VWKHAEFAKD LLPKCFKHNN FSSFVRQLNT YKLKKDNETL SCELARARKQ 120 CDELVAFLKN RLMVGPDQID RIMRQGSCGS EKAVGEEGGG ECLKLFGVWL KEDTLADKRN 180 NKNKRAREDQ MGFGGPRLKK SKPVVDFEPI NLIMTSNK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-20 | 38 | 105 | 25 | 91 | Heat shock factor protein 1 |
5d5v_B | 4e-20 | 38 | 105 | 25 | 91 | Heat shock factor protein 1 |
5d5v_D | 4e-20 | 38 | 105 | 25 | 91 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang07g02020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017426729.1 | 8e-78 | PREDICTED: heat shock factor protein HSF24 | ||||
Swissprot | P22335 | 8e-33 | HSF24_SOLPE; Heat shock factor protein HSF24 | ||||
TrEMBL | A0A0L9UQL8 | 2e-76 | A0A0L9UQL8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T4Q5 | 2e-76 | A0A0S3T4Q5_PHAAN; Uncharacterized protein | ||||
STRING | XP_007156806.1 | 2e-72 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1592 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 1e-33 | heat shock factor 4 |
Publications ? help Back to Top | |||
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