PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang07g01810.2

Common Name

LR48_Vigan06g016000

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GATA

Protein Properties

Length: 521aa MW: 57769.9 Da PI: 5.6126

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang07g01810.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	50	4.1e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Vang07g01810.2 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 **************88888*********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	7.7E-10	1	53	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.66E-11	5	45	No hit	No description
CDD	cd00202	2.24E-16	6	53	No hit	No description
Pfam	PF00320	6.7E-14	7	41	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.2E-12	7	41	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	11.2	7	40	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	7	32	IPR000679	Zinc finger, GATA-type
Pfam	PF13919	3.3E-12	291	374	IPR028020	ASX homology domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RTETDACGDQ 60 RVSRIKSISN KREMTLLKPN NDHDNELSGE FAPDYNQGCQ IFADEDASNR SSSGSAISNS 120 ESCAQYGAMD ACDLTGPVQS VVWDAMVPSK KRTCVGRPKA SSVEKLTKDL CTILHEQQSY 180 FSASSEEDLL FESETPMVSV EIGHGSILIR HPSYIVRDEE SEASSLSVDN KQCPTSEAYS 240 YVGPIMMHND SSYLKPSSLE VEKIRNYTDQ GWQPEQHKRH AFSNYDKSQL ERVQILGNHE 300 SPLCSIDLND IVNYEEFLRI LTNEEQQQLL KLLPGVDTAK LPDSLKVMFN SSQFKENITC 360 FQQLLAEGVF DISLLGAKPE DCKTLKRLAI SNLSKSKWVE HYNFLKKCKN KGGKFDSFGS 420 AVTATTNELN TEMRSPKRMI TKVSCEVKEG VEDGACYSPK SLFALPTDAS SLMLGSLNFV 480 EEISEQDLLL EVPSNTSFPQ AELLHPSASS SSVYSHLIHH *

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RTETDACGDQ  60
RVSRIKSISN KREMTLLKPN NDHDNELSGE FAPDYNQGCQ IFADEDASNR SSSGSAISNS  120
ESCAQYGAMD ACDLTGPVQS VVWDAMVPSK KRTCVGRPKA SSVEKLTKDL CTILHEQQSY  180
FSASSEEDLL FESETPMVSV EIGHGSILIR HPSYIVRDEE SEASSLSVDN KQCPTSEAYS  240
YVGPIMMHND SSYLKPSSLE VEKIRNYTDQ GWQPEQHKRH AFSNYDKSQL ERVQILGNHE  300
SPLCSIDLND IVNYEEFLRI LTNEEQQQLL KLLPGVDTAK LPDSLKVMFN SSQFKENITC  360
FQQLLAEGVF DISLLGAKPE DCKTLKRLAI SNLSKSKWVE HYNFLKKCKN KGGKFDSFGS  420
AVTATTNELN TEMRSPKRMI TKVSCEVKEG VEDGACYSPK SLFALPTDAS SLMLGSLNFV  480
EEISEQDLLL EVPSNTSFPQ AELLHPSASS SSVYSHLIHH *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang07g01810.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017427649.1	0.0	PREDICTED: GATA transcription factor 26-like
Swissprot	Q8W4H1	1e-138	GAT26_ARATH; GATA transcription factor 26
TrEMBL	A0A0L9UQN3	0.0	A0A0L9UQN3_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3T5I2	0.0	A0A0S3T5I2_PHAAN; Uncharacterized protein
STRING	XP_007156588.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4424	31	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-135	GATA transcription factor 26

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]