PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g01810.1
Common NameLR48_Vigan06g016000
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 513aa    MW: 56862.8 Da    PI: 5.3715
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g01810.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA37.92.5e-12533735
            GATA  7 tkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    t TplWR+gp  ++ LCnaCG ++r kg+
  Vang07g01810.1  5 TGTPLWRNGPPEKPVLCNACGSRWRTKGT 33
                    88********88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.0051445IPR000679Zinc finger, GATA-type
PfamPF003204.3E-10533IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.71E-6537No hitNo description
Gene3DG3DSA:3.30.50.101.3E-8533IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.47E-11745No hitNo description
PfamPF139193.2E-12283366IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
LSIATGTPLW RNGPPEKPVL CNACGSRWRT KGTLANYTPL HARTETDACG DQRVSRIKSI  60
SNKREMTLLK PNNDHDNELS GEFAPDYNQG CQIFADEDAS NRSSSGSAIS NSESCAQYGA  120
MDACDLTGPV QSVVWDAMVP SKKRTCVGRP KASSVEKLTK DLCTILHEQQ SYFSASSEED  180
LLFESETPMV SVEIGHGSIL IRHPSYIVRD EESEASSLSV DNKQCPTSEA YSYVGPIMMH  240
NDSSYLKPSS LEVEKIRNYT DQGWQPEQHK RHAFSNYDKS QLERVQILGN HESPLCSIDL  300
NDIVNYEEFL RILTNEEQQQ LLKLLPGVDT AKLPDSLKVM FNSSQFKENI TCFQQLLAEG  360
VFDISLLGAK PEDCKTLKRL AISNLSKSKW VEHYNFLKKC KNKGGKFDSF GSAVTATTNE  420
LNTEMRSPKR MITKVSCEVK EGVEDGACYS PKSLFALPTD ASSLMLGSLN FVEEISEQDL  480
LLEVPSNTSF PQAELLHPSA SSSSVYSHLI HH*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang07g01810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017427649.10.0PREDICTED: GATA transcription factor 26-like
SwissprotQ8W4H11e-126GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A0L9UQN30.0A0A0L9UQN3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T5I20.0A0A0S3T5I2_PHAAN; Uncharacterized protein
STRINGXP_007156588.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-123GATA transcription factor 26
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]