PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang07g00870.1 | ||||||||
Common Name | LR48_Vigan06g049600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | SRS | ||||||||
Protein Properties | Length: 264aa MW: 28165 Da PI: 6.3439 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 226 | 7.2e-70 | 50 | 202 | 2 | 153 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstklssae 95 +sg++sCqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpa++rrerqqql+a++++ ++s + + +r+r++ + +++s l++t+l+s+ Vang07g00870.1 50 GSGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASRRRERQQQLSALQQNMETSGDLPRRQRERDHnNPTSSSPLACTRLPSNP 144 57899*****************************************************99998888777777777763567777899******** PP DUF702 96 skkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 s++ le ++P+ v+s+a frcvrvss+d++eee+aY tav+igGhvfkGiLyd+G+e Vang07g00870.1 145 SSSGLEEVNFPAVVRSSAEFRCVRVSSIDEAEEEYAYSTAVNIGGHVFKGILYDYGPE 202 ********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 6.4E-65 | 53 | 202 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 7.1E-28 | 55 | 97 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.0E-24 | 154 | 201 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MAGLFSLGGR GNNNNEEEIP PPPDTLYCRP ISDDQSSSRS SFMVGGSGSG SGGISCQDCG 60 NQAKKDCPHM RCRTCCKSRG FDCQTHVKST WVPASRRRER QQQLSALQQN METSGDLPRR 120 QRERDHNNPT SSSPLACTRL PSNPSSSGLE EVNFPAVVRS SAEFRCVRVS SIDEAEEEYA 180 YSTAVNIGGH VFKGILYDYG PEGNSNFLGG AGESSSTGVG GLNLTTGAVV SEPLLDPSSS 240 LYPAPLNTFM PGSGTQFFPH PRS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang07g00870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017426605.1 | 1e-176 | PREDICTED: protein SHI RELATED SEQUENCE 1-like isoform X1 | ||||
Swissprot | Q9XGX0 | 6e-76 | SHI_ARATH; Protein SHORT INTERNODES | ||||
TrEMBL | A0A0L9UQL7 | 1e-175 | A0A0L9UQL7_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T433 | 1e-175 | A0A0S3T433_PHAAN; Uncharacterized protein | ||||
STRING | XP_007158606.1 | 1e-153 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF882 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 4e-78 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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