PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0789s00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 255aa MW: 29718.3 Da PI: 6.5192 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.6 | 2.2e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtfskRr g++KK +ELSvLCda++ +iifsstgk+ +++ Vang0789s00010.1 9 KRIENTTTRQVTFSKRRGGLIKKTKELSVLCDAQIGIIIFSSTGKMWQWCT 59 79***********************************************96 PP | |||||||
2 | K-box | 63.1 | 1e-21 | 107 | 191 | 11 | 95 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 ++ e+ +++a L++e+ L+ + ++lGed++ L++++L +Le++Le+s+ k+R+++nell +q+e+l++ke+ l+een++L+ Vang0789s00010.1 107 DHPREEFIHDMAMLRQETLRLELGIQRYLGEDIGCLQFEDLTKLEEELENSVAKVRNRQNELLQQQMENLRRKERILEEENNNLS 191 555667778999***********************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.1E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.913 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.58E-27 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.43E-36 | 2 | 102 | No hit | No description |
PRINTS | PR00404 | 1.4E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-22 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.563 | 110 | 207 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.0E-19 | 110 | 192 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008360 | Biological Process | regulation of cell shape | ||||
GO:0019252 | Biological Process | starch biosynthetic process | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0080155 | Biological Process | regulation of double fertilization forming a zygote and endosperm | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MGRGKIEIKR IENTTTRQVT FSKRRGGLIK KTKELSVLCD AQIGIIIFSS TGKMWQWCTE 60 PFRCMPTTPS FPFLSDPLLL NFVQLLKMEQ IIEKYQRATG ARIAECDHPR EEFIHDMAML 120 RQETLRLELG IQRYLGEDIG CLQFEDLTKL EEELENSVAK VRNRQNELLQ QQMENLRRKE 180 RILEEENNNL SNWEHRAVLE FEKATLEASK PMHMMDQFPF FEEQSAGSIL QLASPVLPHF 240 HPYLQLAQPN IKPQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-16 | 1 | 59 | 1 | 59 | MEF2C |
5f28_B | 2e-16 | 1 | 59 | 1 | 59 | MEF2C |
5f28_C | 2e-16 | 1 | 59 | 1 | 59 | MEF2C |
5f28_D | 2e-16 | 1 | 59 | 1 | 59 | MEF2C |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0789s00010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-143 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017427102.1 | 1e-163 | PREDICTED: protein TRANSPARENT TESTA 16 | ||||
TrEMBL | A0A0L9UU61 | 1e-162 | A0A0L9UU61_PHAAN; Uncharacterized protein | ||||
STRING | XP_007153067.1 | 1e-144 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4935 | 29 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 7e-46 | MIKC_MADS family protein |