PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0788s00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 330aa MW: 37569.8 Da PI: 4.5709 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.2 | 2.4e-19 | 83 | 132 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +grW+AeIrd + + +r++lg++ taeeAa +++a+ +++g Vang0788s00040.1 83 KFRGVRQRP-WGRWAAEIRDpF-----KqTRIWLGTYNTAEEAAMVYDKAAISFRG 132 89*******.**********66.....34***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-28 | 82 | 140 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.642 | 83 | 140 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.80E-31 | 83 | 139 | No hit | No description |
Pfam | PF00847 | 1.8E-12 | 83 | 132 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.47E-21 | 83 | 139 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.4E-33 | 83 | 146 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-10 | 84 | 95 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-10 | 106 | 122 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MEEVSFSEEK FVTYKHVDHG ILNQTAKVVR ISMTDADVTD DEDEGFVKLH KTKKIVNEIR 60 IVKKKPSTSV SVKQHIKEPG RRKFRGVRQR PWGRWAAEIR DPFKQTRIWL GTYNTAEEAA 120 MVYDKAAISF RGCHALTNFI KPPTMEDIHK SSTQEDMPME DMHKSYTKED MLTMEDMHKS 180 STKEDMPTME DMHMDAVSFE YGCYDESQGS WSGLVENVSG GAGSSRESHL SSPTSVLGLQ 240 HEKLVPEEVF ETEGLFIEDP SFEDTFSFVD LYLPSIDFNS GIDFMVDTNV KPSDDDRCDI 300 SPLDNENFQS FNWDIDSYFN DLSSPKTSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-21 | 82 | 139 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 6e-21 | 82 | 139 | 4 | 62 | ATERF1 |
3gcc_A | 6e-21 | 82 | 139 | 4 | 62 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0788s00040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017411756.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF2-like | ||||
TrEMBL | A0A1S3TCF6 | 0.0 | A0A1S3TCF6_VIGRR; ethylene-responsive transcription factor CRF4 | ||||
STRING | XP_007147274.1 | 1e-110 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 3e-37 | cytokinin response factor 4 |