PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0781s00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 367aa MW: 40983.9 Da PI: 9.2824 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.9 | 1.1e-33 | 79 | 133 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Vang0781s00010.1 79 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 133 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-32 | 76 | 134 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.801 | 76 | 136 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-16 | 78 | 134 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-23 | 79 | 134 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.7E-8 | 81 | 131 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.7E-21 | 175 | 213 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
VYAAAIAKGF HIFISSSIKT HHIHRICSSI SLYSSQFSSL IREIMDRMFP PKKPSTMNSN 60 DRPMCVQGDS GLVLTTDPKP RLRWTVELHE RFVDAVAQLG GPDKATPKTI MRVMGVKGLT 120 LYHLKSHLQK FRLGKQPHKD FNEHSIKDGM RASALELQRN IGSSSAMIGR NMNEMQMEVQ 180 RRLHEQLEVQ KNLQLRIEAQ GKYMQSILEK AYHTLAHENM GTGMKGVGSA GQGSTEMGKR 240 VCPYSGSGKS PLIWNDDLRL QDLGTASSCI SPEEDPFKGD HKVQISPPSM DSDPMSEIYD 300 TKPLLLHGES VCVGTNHNKF EASMKLERPS PQRSPLQPER NSPMINASSM AQGTINFLLD 360 HNHNYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-18 | 79 | 135 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-18 | 79 | 135 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-18 | 79 | 135 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-18 | 79 | 135 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-18 | 79 | 135 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-18 | 79 | 135 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-18 | 79 | 135 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-18 | 79 | 135 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-18 | 79 | 135 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-18 | 79 | 135 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-18 | 79 | 135 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-18 | 79 | 135 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0781s00010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017410165.1 | 0.0 | PREDICTED: myb family transcription factor APL-like | ||||
TrEMBL | A0A0L9TFK8 | 0.0 | A0A0L9TFK8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SAB4 | 0.0 | A0A0S3SAB4_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA15G29620.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4964 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79430.2 | 1e-101 | G2-like family protein |