PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0712s00040.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

FAR1

Protein Properties

Length: 496aa MW: 57369.1 Da PI: 7.0238

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0712s00040.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.6	1.5e-16	44	129	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 kfY++Y ++GF vr+++skk+++n+ ++ ++vCs+egk ++ + + + ++++ +C +++ ++ ++kw + +++l+H+H+l+p Vang0712s00040.1 44 KFYEQYKMRCGFGVRTRTSKKNDKNE-VYYFRLVCSREGKYVSSIRP---KVKILPNQKKQCPTGITIARK-NEKWIIWTVVLQHSHDLCP 129 6****************9996666.9*********999887...88999999*******99.***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-13	44	129	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MANYLNLDNV EDEIVQELNI VDDSCLNLEP SLHMSFDTME EAKKFYEQYK MRCGFGVRTR 60 TSKKNDKNEV YYFRLVCSRE GKYVSSIRPK VKILPNQKKQ CPTGITIARK NEKWIIWTVV 120 LQHSHDLCPK RSNLIRANRK LNMHAKHTLE VNDDAGVRIN KSFLSIVGKS GGFENMQFVE 180 RDLVMFVLRH HILNEQAPLG IVTNQCRAMA KAIEEVFPKT RHSTILQQFV VQYDNALKVK 240 AQKETEADFS SLNTTVTCGS QCPIERQFQN EYTHAKFEEV QTEFRSRMNC FIKHKITEGV 300 LNKYTIKEEC MWDGKCADKY YNLRVVCESE SAFVHLENEL NCLAKKFGLT GCLKNNIISY 360 DGELRASSTK GGRRPRRSPQ PSPQPSTPPT SNDLFSTDDQ FERFASHFFE CPILEGKYLA 420 EEFFEDKVGN EEDQVGQQSE NPEHTAYITL IEVMNEIKDL RMFVAEKFDA IENHVRNLES 480 NLNNIRNRFD EHPFS*

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MANYLNLDNV EDEIVQELNI VDDSCLNLEP SLHMSFDTME EAKKFYEQYK MRCGFGVRTR  60
TSKKNDKNEV YYFRLVCSRE GKYVSSIRPK VKILPNQKKQ CPTGITIARK NEKWIIWTVV  120
LQHSHDLCPK RSNLIRANRK LNMHAKHTLE VNDDAGVRIN KSFLSIVGKS GGFENMQFVE  180
RDLVMFVLRH HILNEQAPLG IVTNQCRAMA KAIEEVFPKT RHSTILQQFV VQYDNALKVK  240
AQKETEADFS SLNTTVTCGS QCPIERQFQN EYTHAKFEEV QTEFRSRMNC FIKHKITEGV  300
LNKYTIKEEC MWDGKCADKY YNLRVVCESE SAFVHLENEL NCLAKKFGLT GCLKNNIISY  360
DGELRASSTK GGRRPRRSPQ PSPQPSTPPT SNDLFSTDDQ FERFASHFFE CPILEGKYLA  420
EEFFEDKVGN EEDQVGQQSE NPEHTAYITL IEVMNEIKDL RMFVAEKFDA IENHVRNLES  480
NLNNIRNRFD EHPFS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0712s00040.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014511564.1	1e-135	protein FAR-RED IMPAIRED RESPONSE 1-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	3e-13	FAR1 family protein