PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g25790.1

Common Name

LR48_Vigan02g004000

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HSF

Protein Properties

Length: 262aa MW: 30776 Da PI: 6.687

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g25790.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.8	2.2e-35	37	129	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y+i++d +++e++sws+ +nsfvv+d++ f+ ++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+++ll+ Vang06g25790.1 37 FLTKTYDIVDDVSTDEIVSWSRANNSFVVWDPQAFSISLLPKYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLRGQRHLLKI 122 9*******************99*************************************999.........************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i+r+ks+ Vang06g25790.1 123 IRRRKSS 129 **997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.6E-38	30	120	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	8.57E-34	32	126	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.0E-59	33	126	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.0E-20	37	60	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	9.8E-31	37	126	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.0E-20	75	87	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	76	100	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.0E-20	88	100	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MNRIDDGPVI VKEEFPGEGL VAPQPLEGLH ESGPPPFLTK TYDIVDDVST DEIVSWSRAN 60 NSFVVWDPQA FSISLLPKYF KHNNFSSFVR QLNTYGFRKV DPDKWEFANE GFLRGQRHLL 120 KIIRRRKSSQ QPQVPQQSMD HCVEVGRFGL DGEIDGLRRD KQVLMMELVK LRQQQQNTKN 180 HLQSMESRLK KTEQKQQQMM KFLARAMQNP NFLQQLVQER EWRKELEEAI SNKRRRPICD 240 AEECSVLVKL EQEEYNEISE LE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	1e-25	32	129	12	123	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g25790.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017414155.1	0.0	PREDICTED: heat stress transcription factor A-6b-like
Swissprot	Q9LUH8	1e-118	HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBL	A0A0L9TTM0	0.0	A0A0L9TTM0_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SV59	0.0	A0A0S3SV59_PHAAN; Uncharacterized protein
STRING	XP_007145912.1	1e-164	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1100	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-111	heat shock transcription factor A6B

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]