PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g25570.1 | ||||||||
Common Name | LR48_Vigan02g009700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 128aa MW: 14519 Da PI: 6.8118 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.9 | 3.3e-20 | 11 | 61 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdps++g r +lg+f +aeeAa+a+++a+ ++g Vang06g25570.1 11 RYRGVRRRP-WGKYAAEIRDPSKQG--SRLWLGTFESAEEAARAYDHAAFTMRG 61 6********.**********98865..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.09E-23 | 11 | 70 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-32 | 11 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.97E-29 | 11 | 70 | No hit | No description |
Pfam | PF00847 | 8.4E-14 | 11 | 61 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-36 | 11 | 75 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.803 | 11 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 12 | 23 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 35 | 51 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
LKETKAAEKV RYRGVRRRPW GKYAAEIRDP SKQGSRLWLG TFESAEEAAR AYDHAAFTMR 60 GRVAILNFPN EYRSHASSSI TDENASSSSS ITHANGGQQR QVFEFEYLDD KVLEELLQFE 120 EKNNTES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-38 | 6 | 124 | 9 | 126 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g25570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-123 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017412817.1 | 1e-86 | PREDICTED: ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 2e-44 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A0L9TU94 | 3e-85 | A0A0L9TU94_PHAAN; Uncharacterized protein | ||||
STRING | XP_007145843.1 | 2e-58 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 1e-37 | ERF family protein |
Publications ? help Back to Top | |||
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